y
Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma06g22890.1 |
Family | GH28 |
Protein Properties | Length: 390 Molecular Weight: 41721.5 Isoelectric Point: 6.922 |
Chromosome | Chromosome/Scaffold: 06 Start: 19807229 End: 19809115 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 46 | 378 | 0 |
WTQACASTTAVKIVIPAGTYQMGAVDVKGPCKAPIEVQVDGTIQAPTNVVNLKGADQWLKVQHVNSFTLSGKGVFDGQGPTAWKQNDCTTNKNCKMLCMN FGFNFLNNSIVRDLTSKDSKNFHVNVLGCNNMTFDGFKISAPAESPNTDGIHIGRSTDVKVLNTNIATGDDCISLGDGNKNITVQNVNCGPGHGISVGSL GRYDNEEAVEGLLVKNCTLNNTDNGLRIKTWPSTPLTITVTDMHFEDITMENVSNPVIIDQEYCPWNQCSKKNPSKIKISKVSFKNIKGTSGTKEGVIFI CSSVAPCEGVEMTDVDLTFNGAATTAKCANVKP |
Full Sequence |
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Protein Sequence Length: 390 Download |
MKFTIITIFF SLFLVDFGFA QQGDLDISRF GGKPNSDISQ AFLSAWTQAC ASTTAVKIVI 60 PAGTYQMGAV DVKGPCKAPI EVQVDGTIQA PTNVVNLKGA DQWLKVQHVN SFTLSGKGVF 120 DGQGPTAWKQ NDCTTNKNCK MLCMNFGFNF LNNSIVRDLT SKDSKNFHVN VLGCNNMTFD 180 GFKISAPAES PNTDGIHIGR STDVKVLNTN IATGDDCISL GDGNKNITVQ NVNCGPGHGI 240 SVGSLGRYDN EEAVEGLLVK NCTLNNTDNG LRIKTWPSTP LTITVTDMHF EDITMENVSN 300 PVIIDQEYCP WNQCSKKNPS KIKISKVSFK NIKGTSGTKE GVIFICSSVA PCEGVEMTDV 360 DLTFNGAATT AKCANVKPVI TGKAPTCAA* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-74 | 25 | 377 | 360 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 8.0e-78 | 12 | 375 | 367 | + polygalacturonase | ||
PLN02793 | PLN02793 | 1.0e-83 | 25 | 373 | 357 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-109 | 50 | 377 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 9.0e-120 | 26 | 377 | 356 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAO62938.1 | 0 | 1 | 389 | 1 | 393 | polygalactorunase PG11 precursor [Medicago sativa] |
GenBank | ABE77145.1 | 0 | 5 | 388 | 6 | 400 | putative polygalacturonase [Fragaria x ananassa] |
EMBL | CAA72003.1 | 0 | 2 | 387 | 4 | 389 | polygalacturonase [Medicago sativa] |
EMBL | CAF07050.1 | 0 | 1 | 336 | 3 | 338 | polygalacturonase precursor [Medicago truncatula] |
Swiss-Prot | Q40312 | 0 | 1 | 389 | 1 | 393 | PGLR_MEDSA RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-16 | 96 | 363 | 95 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 0.000000000000001 | 188 | 384 | 149 | 338 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.000000000000001 | 188 | 384 | 149 | 338 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.000000000000001 | 188 | 384 | 149 | 338 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 0.000000000000001 | 188 | 384 | 149 | 338 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |