y
Basic Information | |
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Species | Thellungiella halophila |
Cazyme ID | Thhalv10001484m |
Family | GH28 |
Protein Properties | Length: 394 Molecular Weight: 42666.9 Isoelectric Point: 10.3022 |
Chromosome | Chromosome/Scaffold: 22 Start: 250311 End: 251761 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 54 | 383 | 0 |
SLACGSRARAMVYIPRGTYLIRNIVFWGPCKNIITFKIDGKLIAPANYWSIGTSGYWILFAKVNGISVYGGTIDARGTGYWNCRKKGGYCPQGARSISFS WCSNVLLSGLTSLYSQHIHLTVHHSSNVRIQGIRIRAPSGSPNTDGIIVQSSSGVTISRSSIGTGDDCIALNHGSKNIWIERVSCGPGHGISIGSLGEYA NEEGVENVTVTTSVFTRTQNGVRIKTWARPSNGFVRNVQFRNLVMRNVGYPLIIDQNYCPSGSGCPRQSSGVKISGVTFANIKGTSTRPIAMKLDCSGSH HCTGITLRNINLTYMRKSSASYCKNAHGKA |
Full Sequence |
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Protein Sequence Length: 394 Download |
MAKNISFPCA ITLFSILFFL INPSIAMPSY NVQRYGARGD GRTDSTKPFL TAWSLACGSR 60 ARAMVYIPRG TYLIRNIVFW GPCKNIITFK IDGKLIAPAN YWSIGTSGYW ILFAKVNGIS 120 VYGGTIDARG TGYWNCRKKG GYCPQGARSI SFSWCSNVLL SGLTSLYSQH IHLTVHHSSN 180 VRIQGIRIRA PSGSPNTDGI IVQSSSGVTI SRSSIGTGDD CIALNHGSKN IWIERVSCGP 240 GHGISIGSLG EYANEEGVEN VTVTTSVFTR TQNGVRIKTW ARPSNGFVRN VQFRNLVMRN 300 VGYPLIIDQN YCPSGSGCPR QSSGVKISGV TFANIKGTST RPIAMKLDCS GSHHCTGITL 360 RNINLTYMRK SSASYCKNAH GKASGVMVPR NCM* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-77 | 31 | 390 | 367 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-82 | 32 | 393 | 370 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-83 | 57 | 384 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-95 | 13 | 392 | 402 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 2.0e-141 | 5 | 393 | 390 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_181916.1 | 0 | 1 | 393 | 1 | 394 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002275740.1 | 0 | 7 | 393 | 6 | 389 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002331634.1 | 0 | 26 | 393 | 23 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529094.1 | 0 | 29 | 393 | 25 | 390 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529095.1 | 0 | 9 | 393 | 8 | 390 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 6e-20 | 121 | 366 | 113 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 6e-20 | 123 | 384 | 77 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 6e-20 | 123 | 384 | 77 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 6e-20 | 123 | 384 | 77 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 6e-20 | 123 | 384 | 77 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |