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Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna11646.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 1201 Molecular Weight: 130666 Isoelectric Point: 6.2615 |
Chromosome | Chromosome/Scaffold: Start: 9411477 End: 9424396 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 225 | 503 | 0 |
GAVGEIQTLNIPIGRKYMVKPVQFDGPCNSKNIVIQVDGSIEAPSTIGEWTGCELGSWLGFQNVKGLTIKGAGVIDGKGSIWWRQKPQITNYTTGTNFAA PAALRFRYCDELALSGFTSLNSPNKHIMIHGSNGVDISSVHVYAPEYSPNTDGIVLYGSMRVNIFNSVIKTGDDCIALKSGCSFVNISRVACGPGHGISV GSLGRHPNDRVEEVSVRNVVFYGTQNGARIKTFRGGCNGYIRGISFSNIRLVQTRNPIIIDQYYFSRWHAGNGEIKDLT | |||
GH28 | 544 | 785 | 0 |
GNLEAPSHLDEWRNLADCWICFSNVRGLTLMGTGQINGRGSNWWNKQALQFDNCDQLTLHRVTSIDSPRVHITMHSCTGVQVSNVHISAPARSPNTDGFS VAGSRHVMTALRLRELGCSFINITGVQCGPGHGISVGSLGKQGVPDIVEEVHVQNCRFTNSENGARIKTWMGGYGHARAISFEQITLENAKNPIIINQQY ADGNEAVKVSDVTFRGFEGTSASDQGITLDCSDEIVCGQTFS | |||
GH28 | 818 | 1156 | 0 |
VPTLQIPEEKTFLLQPTKFKGPCKSNRVHVQVLGKLVAPETPEAWKECETDVWLTFTDVHNLTVNGSGQIDGRGSSWWSKAEHQRLYIDEKHKNDDEVVK CHRPKALHFQGCHNLLLTGLTHVNSPKAHISISNCRYVYVANLTITAPEDSPNTDGIDISNSNYVNIHSSYIGTGDDCIAINSGCSNLNITTIKCGPGHG ISVGSLGQDGAYATVENVYVKNCSFSGTQNGVRIKTWQGGSGYAKNITFEKIRLHAAKNSIIIDQYYCNGGHGCKNKSSAVEISDVRYMDIKGTSAKEDA IIFNCNQFSGCRNIVMDNINITSDVPGEELYASCYNING |
Full Sequence |
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Protein Sequence Length: 1201 Download |
MLCELLCKKN TFCSIYEIEP KEKDPDLRPF VLVNNHRAPP HLLRNPPLLY IFAALLPPKQ 60 IQNSADLGEV LLGEIKHEEA SSKHEEEKGD LRTIVDLRAS SEKSERRFEL HVSGIEGQTG 120 GRCVSGIGKG LEFDCLRPEN ISLTLNTTKG TLFGDDSQML MKMNSGLILE RSSITFLFLV 180 IALSSTFDIG YGQNGTFDVR DFGATGNGLN DDSRAFLDAW QRACGAVGEI QTLNIPIGRK 240 YMVKPVQFDG PCNSKNIVIQ VDGSIEAPST IGEWTGCELG SWLGFQNVKG LTIKGAGVID 300 GKGSIWWRQK PQITNYTTGT NFAAPAALRF RYCDELALSG FTSLNSPNKH IMIHGSNGVD 360 ISSVHVYAPE YSPNTDGIVL YGSMRVNIFN SVIKTGDDCI ALKSGCSFVN ISRVACGPGH 420 GISVGSLGRH PNDRVEEVSV RNVVFYGTQN GARIKTFRGG CNGYIRGISF SNIRLVQTRN 480 PIIIDQYYFS RWHAGNGEIK DLTSVSFLML LLASSTFHIG FGDFNVLDFG AAEDGIADDS 540 QLLGNLEAPS HLDEWRNLAD CWICFSNVRG LTLMGTGQIN GRGSNWWNKQ ALQFDNCDQL 600 TLHRVTSIDS PRVHITMHSC TGVQVSNVHI SAPARSPNTD GFSVAGSRHV MTALRLRELG 660 CSFINITGVQ CGPGHGISVG SLGKQGVPDI VEEVHVQNCR FTNSENGARI KTWMGGYGHA 720 RAISFEQITL ENAKNPIIIN QQYADGNEAV KVSDVTFRGF EGTSASDQGI TLDCSDEIVC 780 GQTFSVLDYD AVGDGDTDDS QAFVRAWEAV CGAETYDVPT LQIPEEKTFL LQPTKFKGPC 840 KSNRVHVQVL GKLVAPETPE AWKECETDVW LTFTDVHNLT VNGSGQIDGR GSSWWSKAEH 900 QRLYIDEKHK NDDEVVKCHR PKALHFQGCH NLLLTGLTHV NSPKAHISIS NCRYVYVANL 960 TITAPEDSPN TDGIDISNSN YVNIHSSYIG TGDDCIAINS GCSNLNITTI KCGPGHGISV 1020 GSLGQDGAYA TVENVYVKNC SFSGTQNGVR IKTWQGGSGY AKNITFEKIR LHAAKNSIII 1080 DQYYCNGGHG CKNKSSAVEI SDVRYMDIKG TSAKEDAIIF NCNQFSGCRN IVMDNINITS 1140 DVPGEELYAS CYNINGTSNS TLPCVTCLSN STSSAPYPAP PPLAPYAAPQ ALLAPYSPLI 1200 * 1260 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 2.0e-67 | 491 | 780 | 354 | + polygalacturonase | ||
PLN03003 | PLN03003 | 3.0e-75 | 197 | 488 | 293 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 9.0e-88 | 187 | 493 | 308 | + polygalacturonase | ||
PLN03003 | PLN03003 | 5.0e-109 | 800 | 1172 | 378 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 1.0e-120 | 778 | 1172 | 395 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 6e-23 | 868 | 1141 | 100 | 364 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1bhe_A | 8e-16 | 293 | 488 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1bhe_A | 0.0000000001 | 560 | 758 | 100 | 331 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 5e-20 | 857 | 1154 | 50 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_G | 0.000000000001 | 299 | 488 | 80 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Sequence Alignments (This image is cropped. Click for full image.) |
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