y
Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.006G121300.1 |
Family | GH28 |
Protein Properties | Length: 473 Molecular Weight: 51590.2 Isoelectric Point: 4.5974 |
Chromosome | Chromosome/Scaffold: 06 Start: 23701717 End: 23706599 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 100 | 424 | 0 |
KAACAVESGVVLVPENYCFKITSTIFTGPCKPGLVFQVDGTLMAPDGPESWPKEDSHSQWLVFYRLDQMTLTGKGTIEGNGEQWWDLPCKPHRGPDEKTV SGPCDSPTMIRFFMSSNLVLSGVKIQNSPMFHVKFDGCQGVLIDKLSISSPKLSPNTDGIHLGNTKGVGIYNSVISNGDDCISIGPGCSDVDIEGVTCAP THGISIGSLGVHNSQACVSNLTVRNTIIKESDNGLRIKTWQGGTGSVSGLRFENIQMENVRNCIIIDQYYCLSKECLNQTSAVHVNNVIYRNIKGTYDVR TPPIHFACSDTVACTNITLSEIELL |
Full Sequence |
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Protein Sequence Length: 473 Download |
MSLIRWSFIL WITMILFIHN WDNVEGRYHY HKGQKKSPPA ESPTPEEPSS PPSISPGVPS 60 DPYPTDPGDS PSNCIFDVRS FGAVGDGSAD DTEAFVAAWK AACAVESGVV LVPENYCFKI 120 TSTIFTGPCK PGLVFQVDGT LMAPDGPESW PKEDSHSQWL VFYRLDQMTL TGKGTIEGNG 180 EQWWDLPCKP HRGPDEKTVS GPCDSPTMIR FFMSSNLVLS GVKIQNSPMF HVKFDGCQGV 240 LIDKLSISSP KLSPNTDGIH LGNTKGVGIY NSVISNGDDC ISIGPGCSDV DIEGVTCAPT 300 HGISIGSLGV HNSQACVSNL TVRNTIIKES DNGLRIKTWQ GGTGSVSGLR FENIQMENVR 360 NCIIIDQYYC LSKECLNQTS AVHVNNVIYR NIKGTYDVRT PPIHFACSDT VACTNITLSE 420 IELLPYEGQL LDDPFCWNAY GTQETMTIPP LDCLREGEPD TVVELSAYEC RN* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 7.0e-67 | 69 | 450 | 385 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 2.0e-68 | 76 | 454 | 387 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 2.0e-84 | 78 | 423 | 350 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 5.0e-91 | 109 | 423 | 315 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 7.0e-105 | 75 | 450 | 379 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK95305.1 | 0 | 9 | 469 | 10 | 470 | AF410319_1 At1g48100/F21D18_17 [Arabidopsis thaliana] |
RefSeq | NP_175244.1 | 0 | 9 | 469 | 10 | 470 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002263668.1 | 0 | 1 | 470 | 1 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312305.1 | 0 | 1 | 470 | 1 | 482 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519290.1 | 0 | 1 | 470 | 1 | 479 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 6e-23 | 133 | 423 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 6e-23 | 133 | 423 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 6e-23 | 133 | 423 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 6e-23 | 133 | 423 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 6e-23 | 133 | 423 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |