y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10026299 |
Family | GH28 |
Protein Properties | Length: 369 Molecular Weight: 39403.1 Isoelectric Point: 7.7847 |
Chromosome | Chromosome/Scaffold: 898 Start: 533415 End: 537279 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 29 | 356 | 0 |
SSGKGAVHLVVPAKKSYTLRPIRFSGPCKSKLTVEISGTIQASDDRSDYAEDRSHWLVFDGVQNLVVQGDGTIDGHGKVWWQNSCKPCKKAPTAVTFYKC NNLVVKNLRIQNAQQMHLSFQSCNNVQASNLQVNSPQDSPNTDGIHVTATQNIRISNSVIGTGDDCISIVSGSKNVEADSITCGPGHGISIGSLGSHSSE AYVSGVSVNGAKFSGTSNGLRIKTWQGGSGSATNIKFQNVEMDNVENPIIIDQSYCDQDKPCKRQKSAIQVKDVVYKNIKGTSASEVAIKFDCSKSFPCE GVVLEDVHLERGGSDDVKEAKALCNNVK |
Full Sequence |
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Protein Sequence Length: 369 Download |
MSLTSTLRDG TSSVQHNTLE KAWDAACKSS GKGAVHLVVP AKKSYTLRPI RFSGPCKSKL 60 TVEISGTIQA SDDRSDYAED RSHWLVFDGV QNLVVQGDGT IDGHGKVWWQ NSCKPCKKAP 120 TAVTFYKCNN LVVKNLRIQN AQQMHLSFQS CNNVQASNLQ VNSPQDSPNT DGIHVTATQN 180 IRISNSVIGT GDDCISIVSG SKNVEADSIT CGPGHGISIG SLGSHSSEAY VSGVSVNGAK 240 FSGTSNGLRI KTWQGGSGSA TNIKFQNVEM DNVENPIIID QSYCDQDKPC KRQKSAIQVK 300 DVVYKNIKGT SASEVAIKFD CSKSFPCEGV VLEDVHLERG GSDDVKEAKA LCNNVKLTEL 360 GAVSPSCQ* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 6.0e-83 | 21 | 356 | 339 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 2.0e-89 | 22 | 365 | 350 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 6.0e-111 | 30 | 367 | 341 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 4.0e-120 | 22 | 366 | 351 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 4.0e-138 | 21 | 367 | 354 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF71160.1 | 0 | 19 | 367 | 108 | 455 | AF152758_1 polygalacturonase A [Actinidia chinensis] |
Swiss-Prot | P35336 | 0 | 19 | 368 | 108 | 456 | PGLR_ACTDE RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
RefSeq | XP_002308956.1 | 0 | 18 | 367 | 94 | 442 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002322711.1 | 0 | 18 | 367 | 104 | 452 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529616.1 | 0 | 19 | 367 | 126 | 473 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-25 | 95 | 302 | 113 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 1e-20 | 77 | 310 | 55 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-20 | 77 | 310 | 55 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-20 | 77 | 310 | 55 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-20 | 77 | 310 | 55 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EE093402 | 256 | 77 | 327 | 0 |
EH756941 | 254 | 114 | 367 | 0 |
EE091344 | 246 | 100 | 340 | 0 |
BU888780 | 234 | 136 | 369 | 0 |
EH767961 | 251 | 117 | 367 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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