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Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 488306 |
Family | GH28 |
Protein Properties | Length: 422 Molecular Weight: 45019.1 Isoelectric Point: 8.5693 |
Chromosome | Chromosome/Scaffold: 6 Start: 5914599 End: 5916625 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 77 | 390 | 0 |
ACKVAASTLLVPSGSTFLVGPISFLGKECKENIVFQIDGKIIAPTSAKFKSLKGITIKGKGIIDGRGSVWWNNAKMPRTKPTALRFYGSNGVTVSGITIQ NSPQTHLKFDNCKSIQVSDFTTSSPGDSPNTDGIHLQNSQDAVIYRSTLACGDDCISIQTGCSNINIHDVDCGPGHGISIGGLGKDNTKACVSNITVRDV TMHETTNGVRIKSWQGGSGSVKQVMFSNIQVSNVANPIIIDQYYCDGGGCHNETSAVAVSNINYINIKGTYTKEPVRFACSDSLPCTGISLSTIELKPAT GKASSLDPFCWKAH |
Full Sequence |
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Protein Sequence Length: 422 Download |
MYRLTLKCLS LNFLLLISSL SSRFGTCDAR HSVYWKGNRR SIAQGESSGT INVLDHGAKG 60 DGKSDDTKAF EDAWKVACKV AASTLLVPSG STFLVGPISF LGKECKENIV FQIDGKIIAP 120 TSAKFKSLKG ITIKGKGIID GRGSVWWNNA KMPRTKPTAL RFYGSNGVTV SGITIQNSPQ 180 THLKFDNCKS IQVSDFTTSS PGDSPNTDGI HLQNSQDAVI YRSTLACGDD CISIQTGCSN 240 INIHDVDCGP GHGISIGGLG KDNTKACVSN ITVRDVTMHE TTNGVRIKSW QGGSGSVKQV 300 MFSNIQVSNV ANPIIIDQYY CDGGGCHNET SAVAVSNINY INIKGTYTKE PVRFACSDSL 360 PCTGISLSTI ELKPATGKAS SLDPFCWKAH GELKTKTLPP IQCLKTEKSP EAASRSNNDA 420 C* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 2.0e-65 | 80 | 372 | 306 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03010 | PLN03010 | 5.0e-66 | 52 | 392 | 357 | + polygalacturonase | ||
PLN03003 | PLN03003 | 3.0e-66 | 47 | 416 | 388 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 5.0e-77 | 46 | 380 | 355 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-90 | 53 | 400 | 369 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD46483.1 | 0 | 1 | 421 | 1 | 443 | polygalacturonase PG1 [Glycine max] |
GenBank | ACU24545.1 | 0 | 1 | 421 | 1 | 443 | unknown [Glycine max] |
DDBJ | BAH56488.1 | 0 | 45 | 421 | 95 | 510 | polygalacturonase 1 [Prunus persica] |
RefSeq | NP_196969.1 | 0 | 1 | 421 | 1 | 435 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002521450.1 | 0 | 21 | 409 | 22 | 458 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-26 | 133 | 320 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 3e-25 | 80 | 372 | 21 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-25 | 80 | 372 | 21 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-25 | 80 | 372 | 21 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 3e-25 | 80 | 372 | 21 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |