y
Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 313215 |
Family | GH28 |
Protein Properties | Length: 1135 Molecular Weight: 125325 Isoelectric Point: 5.4473 |
Chromosome | Chromosome/Scaffold: 1 Start: 10407633 End: 10412523 |
Description | Tetratricopeptide repeat (TPR)-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 789 | 1095 | 0 |
YKYVIDGTIVAPDEPSNWDSKFQRIWLEFSKLKGVVFQGKGVIDGSGSKWWAASCKKNKSNALTIESSSGVKVSGLTIQNSQQMNFIIARSDSVRVSKVM VSSPGDSPNTDGIHITGSTNVILQDCKIGTGDDCVSIVNASSNIKMKNIYCGPGHGISIGSLGKDNTTGIVTQVVLDTALLRETTNGLRIKTYQVKKLQS LRKTSIWLDREQFYFIVYLSNREVLMQDVANPILIDQFYCDSPTTCQNQTSAVKISQIMYRNITGTTKSEKAIKFACSDTVPCSHIVLNNVNLEGKDGQV EAYCNSA |
Full Sequence |
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Protein Sequence Length: 1135 Download |
MRGPQALYFL RRTTTLAQHL CPLAPLIVTP RMEFSSFLEE NPSDVVYTHN RKIDELIKSG 60 NLVSAHEVFD GMSVRDVVTY NLLISGNSRN GCSLRAIEIY AEMVSCGLRE SASTFPSVLS 120 VCSDELFCRE GIQVHCRVIS LGFGCNMFVR SALVGLYASF WLFDVALKLF DEMPERNLAV 180 CNLLLKCFCE TGESKRLFGV YCRMELEGVA KNGLTYCYLL RGCSNDQLLY VGKQLHSLVI 240 KSGWDISNIF VANALVDYYS ACGDLSGSIK SFNVVPEKDV ISWNSIVSVC ADYGSVLDSL 300 GLFSKMQFWG KRPSIRSFMS FLNVCSRNSD IQSGKQIHCY VLKMGFDVSS LLVQSSLIDM 360 YGKCNEIESS VLAYQSLPCL TLECCNSLMT SLMHCGITKD IIEMFGLMVD EGTGIDEVTL 420 STVLKALSLS LPESLHSCTL VHCCAIKSGY AADVAVSCSL IDTYSKSGQN EVSRKVFDEL 480 DSPNIFCLTS IINGYARNGM GRDCVEMLRE MDQKNLIPDE VTILSVLSGC SHSGLVEEGE 540 LIFDSLELKY GISPGRKLYA CLVDLLGRAG LVEKAERLLL QAHGDADCIA WSSLLQSCRI 600 HRNERIGRRA AEVLMDLEPE NFAVYIQVSK FYFEIGDFEI SRQIREIAAS RELMREIASG 660 KMVYTDLDIL EELEKFDVLL DDDETKLFDL PSFTSRHSGK NLVNVDTFGA AGDGVSDDTQ 720 AFISAWSKAC GTSKSVFLVP EGRRYLVNAT KFNGPCEQKL IIQVKFNILS PEFLLSSVGK 780 QKLDHSNIYK YVIDGTIVAP DEPSNWDSKF QRIWLEFSKL KGVVFQGKGV IDGSGSKWWA 840 ASCKKNKSNA LTIESSSGVK VSGLTIQNSQ QMNFIIARSD SVRVSKVMVS SPGDSPNTDG 900 IHITGSTNVI LQDCKIGTGD DCVSIVNASS NIKMKNIYCG PGHGISIGSL GKDNTTGIVT 960 QVVLDTALLR ETTNGLRIKT YQVKKLQSLR KTSIWLDREQ FYFIVYLSNR EVLMQDVANP 1020 ILIDQFYCDS PTTCQNQTSA VKISQIMYRN ITGTTKSEKA IKFACSDTVP CSHIVLNNVN 1080 LEGKDGQVEA YCNSAEGFGY GVIHPSADCL YSHDDKGLDQ TRKSEDAETG HDEL* 1140 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03077 | PLN03077 | 7.0e-46 | 44 | 430 | 391 | + Protein ECB2; Provisional | ||
PLN03077 | PLN03077 | 1.0e-77 | 56 | 656 | 605 | + Protein ECB2; Provisional | ||
pfam00295 | Glyco_hydro_28 | 4.0e-78 | 730 | 1095 | 377 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-91 | 703 | 1105 | 413 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-109 | 687 | 1125 | 451 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC98004.1 | 0 | 658 | 1134 | 20 | 457 | Similar to gb |
GenBank | AAF79584.1 | 0 | 1 | 1134 | 1 | 1161 | AC007945_4 F28C11.9 [Arabidopsis thaliana] |
EMBL | CAN65318.1 | 0 | 36 | 1134 | 35 | 1047 | hypothetical protein [Vitis vinifera] |
EMBL | CBI28554.1 | 0 | 36 | 1134 | 35 | 1106 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_173759.2 | 0 | 1 | 663 | 1 | 663 | unknown protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 7e-16 | 827 | 1056 | 115 | 338 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_B | 0.00000000000002 | 831 | 1092 | 84 | 330 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_A | 0.00000000000002 | 831 | 1092 | 84 | 330 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ia5_A | 0.00000000000002 | 831 | 1092 | 84 | 330 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1hg8_A | 0.0000000000005 | 807 | 1058 | 58 | 308 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
ES907693 | 270 | 658 | 917 | 0 |
EV550328 | 251 | 739 | 982 | 0 |
FE686036 | 314 | 659 | 963 | 0 |
EV524933 | 234 | 910 | 1135 | 0 |
GR929886 | 288 | 653 | 933 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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