y
Basic Information | |
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Species | Sorghum bicolor |
Cazyme ID | Sb04g002530.1 |
Family | GH28 |
Protein Properties | Length: 521 Molecular Weight: 55087.1 Isoelectric Point: 4.5698 |
Chromosome | Chromosome/Scaffold: 4 Start: 2279792 End: 2283210 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 129 | 465 | 0 |
TACSLDNPVFLVPAGRRYKVGAIQFLGPCKDNRMIIQIQGTIVAPEEPSEWDPQSPRLWLLFSGLAGARIQGGGVIDGSGSKWWANSCKINKSNPCRGAP TAVTIDSCRGVRVRGLRVRNAQQMHVTVSRSRGVRVGGLRIDAPEDSPNTDGIHVADSTAVTIQSCRIGTGDDCISIVNGSFGVKMRNIDCGPGHGISIG SLGKGGAFAAVADVALDGARIRRAQNGVRIKTWQGGAGYVRGVRFANVDMDGVDHPIVIDQFYCDVPPGGGDRSRTCANQTSAVAVSDVSYRNITGTSRR AEAIRFACSDAVPCTGIVLRDINLRRDDDDGEVQTVC |
Full Sequence |
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Protein Sequence Length: 521 Download |
MGAAARRCVL LLALLMLVAA ARTAAVGDGD GGGGGNGGGE ATEEDQVLRL WSSSLAAASG 60 EEADDEDRFS NWEWDDDDDD EEDKEEDDHV MAVMQGKGAC RNVVNVESFG AAGDGDADDT 120 QAFASAWKTA CSLDNPVFLV PAGRRYKVGA IQFLGPCKDN RMIIQIQGTI VAPEEPSEWD 180 PQSPRLWLLF SGLAGARIQG GGVIDGSGSK WWANSCKINK SNPCRGAPTA VTIDSCRGVR 240 VRGLRVRNAQ QMHVTVSRSR GVRVGGLRID APEDSPNTDG IHVADSTAVT IQSCRIGTGD 300 DCISIVNGSF GVKMRNIDCG PGHGISIGSL GKGGAFAAVA DVALDGARIR RAQNGVRIKT 360 WQGGAGYVRG VRFANVDMDG VDHPIVIDQF YCDVPPGGGD RSRTCANQTS AVAVSDVSYR 420 NITGTSRRAE AIRFACSDAV PCTGIVLRDI NLRRDDDDGE VQTVCNCAVG FDYGRVRPAA 480 DCLRSSTCGG APDDHHGDEE EEEEEQGKRK DEAVVLHTEL * 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 1.0e-71 | 105 | 446 | 344 | + polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-78 | 102 | 445 | 346 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-87 | 137 | 446 | 310 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-93 | 104 | 446 | 346 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 4.0e-119 | 103 | 487 | 387 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD07736.1 | 0 | 101 | 490 | 78 | 459 | putative polygalacturonase [Oryza sativa Japonica Group] |
GenBank | EEC72414.1 | 0 | 101 | 490 | 78 | 459 | hypothetical protein OsI_05716 [Oryza sativa Indica Group] |
RefSeq | NP_001045783.1 | 0 | 9 | 490 | 17 | 486 | Os02g0130200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002328587.1 | 0 | 80 | 485 | 40 | 435 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002453250.1 | 0 | 1 | 520 | 1 | 520 | hypothetical protein SORBIDRAFT_04g002530 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-22 | 198 | 391 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 2e-20 | 201 | 438 | 77 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-20 | 201 | 438 | 77 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-20 | 201 | 438 | 77 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-20 | 201 | 438 | 77 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |