y
Basic Information | |
---|---|
Species | Setaria italica |
Cazyme ID | Si031920m |
Family | GH28 |
Protein Properties | Length: 468 Molecular Weight: 49769.3 Isoelectric Point: 8.4876 |
Chromosome | Chromosome/Scaffold: 2 Start: 42753266 End: 42754669 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 105 | 446 | 0 |
AQACSSEQPAVLLVPAGKSYLVKETSLSGPCKSKVTFKLEGTLVAPEDKSGWSKQGHPHWVSFSNVDSLTVTGKGAMDGKGKTSWKNSCRRNHKMPCTFA PAALTFSSCNHLKVENIKLLNAPQIHLWVEFCSDVTLSRLTIASPGDSPENDGIHVAHSDGVRILGAKIKAGDDCISIAMGTTNLYATKIECGPGHGISV GSLGKGSTRAEVSNVTIDGAHVSGTLFGARIKTWQGGTGYARDIKFLNMVMDKVKNPIVIDQNYCTTSDPSKPKACSQKESAAVEISNVEFSNIRGTSVN RDAIRLHCSEAFPCRGVVLRDIELKTRGGDEKNAATSTCENA |
Full Sequence |
---|
Protein Sequence Length: 468 Download |
MASRSLLATV CLLLLTLLGG TLVEARPAPR SPHRNAPRRH LWTTDAPEGS ADGYPNTWYA 60 HRKLGEKSKP PKNATTKGVQ FDVGSFGATG DGQTDDTGAF QNAWAQACSS EQPAVLLVPA 120 GKSYLVKETS LSGPCKSKVT FKLEGTLVAP EDKSGWSKQG HPHWVSFSNV DSLTVTGKGA 180 MDGKGKTSWK NSCRRNHKMP CTFAPAALTF SSCNHLKVEN IKLLNAPQIH LWVEFCSDVT 240 LSRLTIASPG DSPENDGIHV AHSDGVRILG AKIKAGDDCI SIAMGTTNLY ATKIECGPGH 300 GISVGSLGKG STRAEVSNVT IDGAHVSGTL FGARIKTWQG GTGYARDIKF LNMVMDKVKN 360 PIVIDQNYCT TSDPSKPKAC SQKESAAVEI SNVEFSNIRG TSVNRDAIRL HCSEAFPCRG 420 VVLRDIELKT RGGDEKNAAT STCENAVLGE TSNVSPAPCS SAATKEDL 480 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 2.0e-83 | 103 | 459 | 360 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 1.0e-86 | 103 | 453 | 353 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 6.0e-101 | 108 | 459 | 352 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 6.0e-107 | 102 | 456 | 357 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-111 | 102 | 464 | 363 | + Probable polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAC57273.1 | 0 | 61 | 446 | 33 | 410 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
DDBJ | BAC57279.1 | 0 | 76 | 464 | 48 | 428 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
GenBank | EAZ39077.1 | 0 | 61 | 446 | 33 | 410 | hypothetical protein OsJ_23509 [Oryza sativa Japonica Group] |
GenBank | EEC81719.1 | 0 | 76 | 464 | 48 | 428 | hypothetical protein OsI_25337 [Oryza sativa Indica Group] |
RefSeq | XP_002466242.1 | 0 | 81 | 461 | 75 | 450 | hypothetical protein SORBIDRAFT_01g004220 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rmg_A | 1e-18 | 63 | 436 | 1 | 346 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1bhe_A | 2e-17 | 116 | 428 | 57 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1czf_B | 8e-16 | 173 | 411 | 97 | 326 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 8e-16 | 173 | 411 | 97 | 326 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1hg8_A | 0.000000000000001 | 105 | 401 | 12 | 304 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |