y
Basic Information | |
---|---|
Species | Phaseolus vulgaris |
Cazyme ID | Phvul.002G063500.1 |
Family | GH28 |
Protein Properties | Length: 472 Molecular Weight: 51642 Isoelectric Point: 9.1124 |
Chromosome | Chromosome/Scaffold: 02 Start: 7121655 End: 7124367 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 99 | 435 | 0 |
GACKVAGATVKIPAQLKFLIKPVTLQGPCMPDLTLQIDGTLLAPPQISSWPTSSLFQWINFKWVQNFTIKGSGTVDGQGYYWWKSSEFYDIQKKSYSKNI PSMKPTAIRFYSSNSVTVRDIRIINSPLCHLKFDNSKGIEVDNITISSPESSPNTDGIHLQNTQDVEIKRSIIATGDDCVSIQTGCSNIHVHHINCGPGH GISLGGLGKDKSAACVSDIIVEDISMKNTLYGARIKTWQGGFGMVKNVSFSRIQVYDVMFPIMIDQYYCDKQKCKNHTSTVVISGVKFDEISGTFGIQPV HLACSTSIPCTDVDLTDIQLSPSPKYKGLQQAVCWNS |
Full Sequence |
---|
Protein Sequence Length: 472 Download |
MKRNRSFSLL FFLSLLVIIF VTFSTVSVEA RKKNLHKRNN HKDGHSGNGH GRGSHSPRPT 60 PTPPPYYGSQ GSMFDVLSFG AKGNGVSDDS EALVAAWKGA CKVAGATVKI PAQLKFLIKP 120 VTLQGPCMPD LTLQIDGTLL APPQISSWPT SSLFQWINFK WVQNFTIKGS GTVDGQGYYW 180 WKSSEFYDIQ KKSYSKNIPS MKPTAIRFYS SNSVTVRDIR IINSPLCHLK FDNSKGIEVD 240 NITISSPESS PNTDGIHLQN TQDVEIKRSI IATGDDCVSI QTGCSNIHVH HINCGPGHGI 300 SLGGLGKDKS AACVSDIIVE DISMKNTLYG ARIKTWQGGF GMVKNVSFSR IQVYDVMFPI 360 MIDQYYCDKQ KCKNHTSTVV ISGVKFDEIS GTFGIQPVHL ACSTSIPCTD VDLTDIQLSP 420 SPKYKGLQQA VCWNSYGKSQ GPLLPSSIDD CLKSGGGLIK RIARSHDRVC Y* 480 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 2.0e-69 | 71 | 454 | 389 | + polygalacturonase | ||
PLN02188 | PLN02188 | 7.0e-70 | 68 | 445 | 382 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 3.0e-71 | 106 | 424 | 320 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-75 | 72 | 445 | 379 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 9.0e-96 | 73 | 466 | 397 | + Probable polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_189293.1 | 0 | 29 | 470 | 29 | 468 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002266099.1 | 0 | 67 | 470 | 75 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312682.1 | 0 | 34 | 470 | 36 | 466 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002315680.1 | 0 | 74 | 459 | 1 | 378 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527898.1 | 0 | 1 | 470 | 1 | 477 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-25 | 164 | 370 | 110 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 2e-17 | 75 | 438 | 22 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1czf_B | 0.000000000000003 | 202 | 423 | 125 | 349 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 0.000000000000003 | 202 | 423 | 125 | 349 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1nhc_F | 0.000000000000006 | 166 | 419 | 73 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |