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Basic Information | |
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Species | Vitis vinifera |
Cazyme ID | GSVIVT01032447001 |
Family | GH28 |
Protein Properties | Length: 484 Molecular Weight: 51673.2 Isoelectric Point: 7.8423 |
Chromosome | Chromosome/Scaffold: 14 Start: 27507728 End: 27510391 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 97 | 439 | 0 |
AAACQVRGSTMMVPSGSVFLVKPITFSGPNCEPNIVFQLDGKIIAPRSSSAWGSGFYQWLDFSKLQGITIRGKGTIDGQGSIWWNDSTDESESETPTAGD SLYSSKQDSISGELSAKMPSTKPTALRFYGSSVVTVTGITIQNSPQTHLKFDDCTGVQVSGVTVSSPGDSPNTDGIHLQNSQNVVIYSTNLACGDDCVSI QTGCSNIFVHNVNCGPGHGISIGGLGRDNTKACVKNVTVRDITMQDTMTGVRIKTWQGGSGSVSGVMFSNIQVSRVKTPIMIDQFYCDKSRCQNETKAVA VSDINYVNIRGTYTVNPVHFACSDSLPCSGVTLTTIQLKPAQE |
Full Sequence |
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Protein Sequence Length: 484 Download |
MSGFSLKRLA LTILIALLAC SSSFQACSAR KAMYTRQLKT IGKGYDGYNY QDPKLMDEGN 60 GVTPLKNTGS STFNVLHFGA KGDGKADDTK AFEAAWAAAC QVRGSTMMVP SGSVFLVKPI 120 TFSGPNCEPN IVFQLDGKII APRSSSAWGS GFYQWLDFSK LQGITIRGKG TIDGQGSIWW 180 NDSTDESESE TPTAGDSLYS SKQDSISGEL SAKMPSTKPT ALRFYGSSVV TVTGITIQNS 240 PQTHLKFDDC TGVQVSGVTV SSPGDSPNTD GIHLQNSQNV VIYSTNLACG DDCVSIQTGC 300 SNIFVHNVNC GPGHGISIGG LGRDNTKACV KNVTVRDITM QDTMTGVRIK TWQGGSGSVS 360 GVMFSNIQVS RVKTPIMIDQ FYCDKSRCQN ETKAVAVSDI NYVNIRGTYT VNPVHFACSD 420 SLPCSGVTLT TIQLKPAQEV SQSNGPFCWE TYGQLKTNTI PPIDCLQRGK PSKNQLHSNG 480 DSC* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 4.0e-62 | 105 | 434 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 8.0e-63 | 61 | 435 | 382 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 6.0e-64 | 73 | 434 | 368 | + polygalacturonase | ||
PLN02218 | PLN02218 | 5.0e-69 | 71 | 435 | 370 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 8.0e-81 | 73 | 462 | 395 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD46483.1 | 0 | 4 | 483 | 6 | 443 | polygalacturonase PG1 [Glycine max] |
GenBank | ABW76153.1 | 0 | 1 | 483 | 1 | 483 | polygalacturonase [Vitis vinifera] |
DDBJ | BAH56488.1 | 0 | 1 | 483 | 2 | 510 | polygalacturonase 1 [Prunus persica] |
EMBL | CBI34901.1 | 0 | 1 | 483 | 1 | 483 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002276805.1 | 0 | 1 | 483 | 1 | 492 | PREDICTED: polygalacturonase [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-24 | 166 | 385 | 113 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 2e-19 | 136 | 438 | 41 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-19 | 136 | 438 | 41 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-19 | 136 | 438 | 41 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-19 | 136 | 438 | 41 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |