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Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra001279 |
Family | GH28 |
Protein Properties | Length: 438 Molecular Weight: 48074.8 Isoelectric Point: 9.2629 |
Chromosome | Chromosome/Scaffold: 03 Start: 15625704 End: 15628170 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 90 | 427 | 0 |
WEAACSSKGTAYIVVPENRAYTLKPVKFSGPCKSSMIVFKIYGKIEAWKNPSDYRERGFWIVFQTVDNLRVEGGGRVDGNGKIWWPKSCKINPELPCQEA PTAVTFVECNNLMVRNIRLENAQQMHMRVQKCENVKALNLMVKSPGDSPNTDGIHVTGTRNILIQDSIIRTGDDCISIVSGSENVRATGITCGPGHGISI GSLGAHNSEAYVSNVVVSKATLIGTTNGVRIKTWQGGHGMAKNIIFKDILMKNVTNPIIINQNYCDQTKACPEQKSAVQVSNVLYKNIHGTSSSPEAIKF VCSKSIPCQGISLQNVELVDQNTKQDVSKATCSNVKLK |
Full Sequence |
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Protein Sequence Length: 438 Download |
MYQKTIIFLT ILLTSLRSCS SSYPFDPRYE HSISPNVYYE TNHQHGHITH NRHMKDPHAA 60 PRSSPRAFNV NSFGAKANGN DDSQAFMKAW EAACSSKGTA YIVVPENRAY TLKPVKFSGP 120 CKSSMIVFKI YGKIEAWKNP SDYRERGFWI VFQTVDNLRV EGGGRVDGNG KIWWPKSCKI 180 NPELPCQEAP TAVTFVECNN LMVRNIRLEN AQQMHMRVQK CENVKALNLM VKSPGDSPNT 240 DGIHVTGTRN ILIQDSIIRT GDDCISIVSG SENVRATGIT CGPGHGISIG SLGAHNSEAY 300 VSNVVVSKAT LIGTTNGVRI KTWQGGHGMA KNIIFKDILM KNVTNPIIIN QNYCDQTKAC 360 PEQKSAVQVS NVLYKNIHGT SSSPEAIKFV CSKSIPCQGI SLQNVELVDQ NTKQDVSKAT 420 CSNVKLKSSG RLSSLCT* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 5.0e-96 | 63 | 429 | 376 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 4.0e-108 | 63 | 430 | 372 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 1.0e-110 | 94 | 429 | 336 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 3.0e-136 | 57 | 430 | 381 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 3.0e-140 | 32 | 437 | 418 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC26512.1 | 0 | 5 | 436 | 17 | 458 | polygalacturonase precursor [Cucumis melo] |
GenBank | AAF21207.1 | 0 | 1 | 437 | 1 | 438 | AC013483_31 putative polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_187454.2 | 0 | 1 | 437 | 1 | 439 | QRT2 (QUARTET 2); polygalacturonase [Arabidopsis thaliana] |
RefSeq | XP_002313308.1 | 0 | 60 | 437 | 1 | 376 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517823.1 | 0 | 59 | 436 | 71 | 446 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-21 | 149 | 414 | 102 | 368 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 8e-18 | 143 | 407 | 55 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 8e-18 | 143 | 407 | 55 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 8e-18 | 143 | 407 | 55 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 8e-18 | 143 | 407 | 55 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |