y
Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_92.36 |
Family | GH28 |
Protein Properties | Length: 497 Molecular Weight: 55043.6 Isoelectric Point: 5.465 |
Chromosome | Chromosome/Scaffold: 92 Start: 324232 End: 326904 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 141 | 475 | 0 |
EKACSYKGPALFLVPERRTYLIGPIRFLGPCKSNLVIQISGTILASDNRSDYRKDPRHWIVIDSVDNLLVEGGGTIHGNGQIWWRNSCKINKSLPCKEAP TAVTFYKCKNLMVRNVKVQDAQQMQVSFEKCSEVTASDLTVTAPEKSPNTDGIHVTNTQNILITNTFIGTGDDCISIESGSHNVQIEELTCGPGHGISIG SLGDNNSKAFVSFVTVNGAKLSGTTNGVRIKTYQGGSGSASNIKFQNVDMENVKNPIIIDQNYCDQKKPCKKQKSAVQVKDVLYQNIQGNSASDVAIDFD CSENYPCLGVKLQNVRLQRADRVDEEAKAICNHVE |
Full Sequence |
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Protein Sequence Length: 497 Download |
MAVLYYDNYN RTHLLILSFS ILFFSFSSRL VNSGFHGERR RERVHGYHYD ELNNFSEDQE 60 GGLTLLSGAG YDPEAHPSFL SSINGDRDEE FTEAEPSVLS FKGIEDLRSA KPRSVIFNVD 120 DFGAEGDGIH DDTQVFEEAW EKACSYKGPA LFLVPERRTY LIGPIRFLGP CKSNLVIQIS 180 GTILASDNRS DYRKDPRHWI VIDSVDNLLV EGGGTIHGNG QIWWRNSCKI NKSLPCKEAP 240 TAVTFYKCKN LMVRNVKVQD AQQMQVSFEK CSEVTASDLT VTAPEKSPNT DGIHVTNTQN 300 ILITNTFIGT GDDCISIESG SHNVQIEELT CGPGHGISIG SLGDNNSKAF VSFVTVNGAK 360 LSGTTNGVRI KTYQGGSGSA SNIKFQNVDM ENVKNPIIID QNYCDQKKPC KKQKSAVQVK 420 DVLYQNIQGN SASDVAIDFD CSENYPCLGV KLQNVRLQRA DRVDEEAKAI CNHVELTETG 480 VVFPRCPDYH LKHDEL* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 2.0e-93 | 117 | 460 | 347 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 1.0e-98 | 114 | 487 | 378 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 9.0e-123 | 144 | 474 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 5.0e-147 | 108 | 457 | 352 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-174 | 118 | 486 | 371 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF71160.1 | 0 | 70 | 488 | 42 | 457 | AF152758_1 polygalacturonase A [Actinidia chinensis] |
GenBank | ACV85695.1 | 0 | 1 | 496 | 1 | 494 | ripening-induced polygalacturonase 2 [Carica papaya] |
Swiss-Prot | P35336 | 0 | 70 | 486 | 42 | 455 | PGLR_ACTDE RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
RefSeq | XP_002322711.1 | 0 | 50 | 486 | 28 | 452 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529616.1 | 0 | 48 | 487 | 37 | 474 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-25 | 160 | 457 | 52 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1czf_B | 3e-18 | 216 | 430 | 107 | 317 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 3e-18 | 216 | 430 | 107 | 317 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1nhc_F | 2e-16 | 213 | 453 | 77 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-16 | 213 | 453 | 77 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |