y
Basic Information | |
---|---|
Species | Eucalyptus grandis |
Cazyme ID | Eucgr.I01918.1 |
Family | GH28 |
Protein Properties | Length: 389 Molecular Weight: 42052.5 Isoelectric Point: 6.6779 |
Chromosome | Chromosome/Scaffold: 9 Start: 29123369 End: 29125803 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 64 | 369 | 0 |
DACKSSVSMPIMHVPHNKTCLLQPLVLRGPCNSQNLTIQIDGTLVASGDPSAWKCDKKDCRHWIMISDVDGLSGLVIDKCNEVRLSELTFKDSPQMHIAI EGSTRVTAANLTITSPGHSPNTDGIHIQRSQHVLVRDCYIGTGDDCISIGQGSAHLDISGISCGPGHGVSIGSLGKHGSRETVEDVHVRDVHFVGTSNGV RIKTWQGGKGYARDIVFERITVTNSSHPIIIDQFYCDHEHCKNQTSAVQISNVTYSQVNGTSHAKAAVELACSETHPCRDILMKDITLNLTVKGKETTSH CSNVRG |
Full Sequence |
---|
Protein Sequence Length: 389 Download |
MATIAPPAIA RILLCFFVLA RVCASTGSQP SVDDGQNFFD VVEYGAVGDG RTDDTKAFKK 60 AWTDACKSSV SMPIMHVPHN KTCLLQPLVL RGPCNSQNLT IQIDGTLVAS GDPSAWKCDK 120 KDCRHWIMIS DVDGLSGLVI DKCNEVRLSE LTFKDSPQMH IAIEGSTRVT AANLTITSPG 180 HSPNTDGIHI QRSQHVLVRD CYIGTGDDCI SIGQGSAHLD ISGISCGPGH GVSIGSLGKH 240 GSRETVEDVH VRDVHFVGTS NGVRIKTWQG GKGYARDIVF ERITVTNSSH PIIIDQFYCD 300 HEHCKNQTSA VQISNVTYSQ VNGTSHAKAA VELACSETHP CRDILMKDIT LNLTVKGKET 360 TSHCSNVRGR RNSNIFPNIS CLEEDEDL* 420 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 6.0e-82 | 16 | 377 | 398 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 1.0e-89 | 41 | 380 | 374 | + polygalacturonase ADPG | ||
PLN03010 | PLN03010 | 3.0e-96 | 34 | 374 | 358 | + polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-96 | 37 | 388 | 380 | + Probable polygalacturonase At3g15720 | ||
PLN02793 | PLN02793 | 6.0e-104 | 39 | 386 | 381 | + Probable polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB10216.1 | 0 | 13 | 383 | 10 | 407 | polygalacturonase-like protein [Arabidopsis thaliana] |
EMBL | CBI15273.1 | 0 | 39 | 382 | 26 | 388 | unnamed protein product [Vitis vinifera] |
EMBL | CBI15274.1 | 0 | 39 | 386 | 26 | 385 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002267133.1 | 0 | 39 | 386 | 26 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002267182.1 | 0 | 39 | 382 | 26 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-19 | 140 | 351 | 156 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 9e-18 | 40 | 369 | 22 | 355 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ib4_B | 1e-17 | 148 | 367 | 117 | 333 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ib4_A | 1e-17 | 148 | 367 | 117 | 333 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ia5_A | 1e-17 | 148 | 367 | 117 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |