y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10030888 |
Family | GH28 |
Protein Properties | Length: 407 Molecular Weight: 43660 Isoelectric Point: 4.6105 |
Chromosome | Chromosome/Scaffold: 373 Start: 1061583 End: 1063562 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 124 | 356 | 0 |
QALTIDSSTGVKVKGLTIKNSQQMNFVISKSSSVRVSDVLVSAPGDSPNTDGIHITQSTDVVLQNCKIGTGDDCVSIVNGSSNIRMKRLYCGPGHGISIG SLGQDNSTGIVTGVILNTALLRNTTNGLRIKTWQGGNGHVRGVRYDNVQMENVANPIIIDQFYCDSPNACQNQTEAVEISKIMYRNITGTSKSAKAMKFA CSDTVPCSDIVLINVNLEGRDGTVETYCNSAEG |
Full Sequence |
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Protein Sequence Length: 407 Download |
MDRLFIISFI GLLLVTYGVA GNILYDELTT LEKLETLEEH EEVDDDDCDV MSWRSERSGK 60 VLVNVDSFGA AGDGVSDDTQ AFVKAWSTAC NASSNAVFLV PPGRQYLVAA TKFKGPCGDK 120 LIVQALTIDS STGVKVKGLT IKNSQQMNFV ISKSSSVRVS DVLVSAPGDS PNTDGIHITQ 180 STDVVLQNCK IGTGDDCVSI VNGSSNIRMK RLYCGPGHGI SIGSLGQDNS TGIVTGVILN 240 TALLRNTTNG LRIKTWQGGN GHVRGVRYDN VQMENVANPI IIDQFYCDSP NACQNQTEAV 300 EISKIMYRNI TGTSKSAKAM KFACSDTVPC SDIVLINVNL EGRDGTVETY CNSAEGSAYG 360 IVRPSVDCLS SHDKDYASTS NPQFTRDMNI VDVSEATSQD FVHTEL* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 6.0e-13 | 57 | 124 | 68 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 4.0e-66 | 125 | 364 | 240 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-67 | 125 | 358 | 234 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 5.0e-73 | 63 | 385 | 383 | + Probable polygalacturonase At3g15720 | ||
PLN02793 | PLN02793 | 1.0e-78 | 125 | 371 | 248 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC98004.1 | 0 | 14 | 373 | 15 | 437 | Similar to gb |
EMBL | CAN65318.1 | 0 | 16 | 406 | 656 | 1052 | hypothetical protein [Vitis vinifera] |
RefSeq | NP_173760.2 | 0 | 14 | 373 | 16 | 440 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | XP_002317091.1 | 1e-31 | 31 | 124 | 2 | 94 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002317091.1 | 0 | 125 | 406 | 159 | 447 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 7e-19 | 114 | 351 | 91 | 328 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 7e-19 | 114 | 351 | 91 | 328 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 7e-19 | 114 | 351 | 91 | 328 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 7e-19 | 114 | 351 | 91 | 328 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 7e-19 | 114 | 351 | 91 | 328 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |