y
Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.J03054.1 |
Family | GH28 |
Protein Properties | Length: 449 Molecular Weight: 48773.6 Isoelectric Point: 8.5456 |
Chromosome | Chromosome/Scaffold: 10 Start: 37669070 End: 37673475 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 81 | 415 | 0 |
ACSLSAPARILLSAQKTYLFRSIDFAGPCRSKITIEIAGSVVAPKDPEAWEGLNPHRWIYFHGVKHLTLEGGGKINGMGQEWWRRSCKTNATNPCHPAPT AVIFHRCKDLIVRNLRVINGQQMHVAFTNCLRVRASNLGVIAPAASPNTDGIHISASRGVQIEDCIIRTGDDCISIVSNSSRITVRDIICGPGHGISIGS LGKSKSWAEVHDVLVNGALVSNTDNGLRIKTWQGGGGSVTNVIFQNVWMENVSHPIIIDQYYCDSFEPCPNQTSAVQVGNISFMGIKGTSATEKAMIFAC SDDAPCEGLYLEDIHLVSHTGGTTRSSCWQAHGSV |
Full Sequence |
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Protein Sequence Length: 449 Download |
MRRRRSRFSP GPFILHVGVL LFVCSNIVLA ERFDSLPRLP RPGSTARRPK SRIVLSVDDH 60 GARGDGIGDD TAAVGNVWKL ACSLSAPARI LLSAQKTYLF RSIDFAGPCR SKITIEIAGS 120 VVAPKDPEAW EGLNPHRWIY FHGVKHLTLE GGGKINGMGQ EWWRRSCKTN ATNPCHPAPT 180 AVIFHRCKDL IVRNLRVING QQMHVAFTNC LRVRASNLGV IAPAASPNTD GIHISASRGV 240 QIEDCIIRTG DDCISIVSNS SRITVRDIIC GPGHGISIGS LGKSKSWAEV HDVLVNGALV 300 SNTDNGLRIK TWQGGGGSVT NVIFQNVWME NVSHPIIIDQ YYCDSFEPCP NQTSAVQVGN 360 ISFMGIKGTS ATEKAMIFAC SDDAPCEGLY LEDIHLVSHT GGTTRSSCWQ AHGSVSGRVY 420 PPPCLSFEDR DSFIKQKTQS GSENFHSF* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 1.0e-79 | 51 | 426 | 377 | + polygalacturonase | ||
PLN02188 | PLN02188 | 1.0e-80 | 19 | 424 | 409 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 2.0e-90 | 82 | 408 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 3.0e-111 | 55 | 421 | 369 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 0 | 19 | 445 | 427 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF61444.1 | 0 | 33 | 440 | 42 | 451 | AF138858_1 polygalacturonase [Solanum lycopersicum] |
GenBank | ABD28401.1 | 0 | 30 | 426 | 32 | 430 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ABM67700.1 | 0 | 13 | 448 | 13 | 445 | polygalacturonase [Citrus sinensis] |
RefSeq | XP_002299601.1 | 0 | 19 | 440 | 16 | 441 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517603.1 | 0 | 22 | 445 | 5 | 423 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-22 | 150 | 342 | 122 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1hg8_A | 9e-21 | 80 | 408 | 11 | 340 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1nhc_F | 1e-20 | 147 | 408 | 72 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-20 | 147 | 408 | 72 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-20 | 147 | 408 | 72 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |