y
Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa026655m |
Family | GH28 |
Protein Properties | Length: 376 Molecular Weight: 40831.4 Isoelectric Point: 8.9901 |
Chromosome | Chromosome/Scaffold: 2 Start: 9290755 End: 9293480 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 28 | 360 | 0 |
KKACSSQRGVDLVVPKNGNYHLKPINFSGPCKSPITLKIYGTIKASPNRSDYKNDRRHWIVFENVTNFRVEGGGTIDGNGRIWWQNSCKVNESLPCTIAP NAMTFFGCINLQVDNIRFQNPQKMHLSFHECVNVKASNLIVTAPEDSPNTDGIHVTGTQNIQIKNCLIRTGDDCISIVSGSRNVRATDIICGPGHGISIG SLGAGNSEAEVSDVMVSRAKMMGTTNGLRIKTWQGGSGYASNIVFKNIMMYNVSNPIIINQYYCDQDEPCQEQKSAVKINNVVYDNVKGTSASKVAVKFD CSKRFGCQGILLRNVNIKPLGEGTAEASCENVS |
Full Sequence |
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Protein Sequence Length: 376 Download |
KNIVVNVDSF GAKGNGGDDS QAFRKAWKKA CSSQRGVDLV VPKNGNYHLK PINFSGPCKS 60 PITLKIYGTI KASPNRSDYK NDRRHWIVFE NVTNFRVEGG GTIDGNGRIW WQNSCKVNES 120 LPCTIAPNAM TFFGCINLQV DNIRFQNPQK MHLSFHECVN VKASNLIVTA PEDSPNTDGI 180 HVTGTQNIQI KNCLIRTGDD CISIVSGSRN VRATDIICGP GHGISIGSLG AGNSEAEVSD 240 VMVSRAKMMG TTNGLRIKTW QGGSGYASNI VFKNIMMYNV SNPIIINQYY CDQDEPCQEQ 300 KSAVKINNVV YDNVKGTSAS KVAVKFDCSK RFGCQGILLR NVNIKPLGEG TAEASCENVS 360 VIHRGRVSPK CSSTI* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 2.0e-93 | 5 | 359 | 362 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 3.0e-103 | 5 | 370 | 371 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 3.0e-116 | 31 | 361 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 1.0e-142 | 4 | 369 | 368 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-149 | 5 | 372 | 371 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF71160.1 | 0 | 5 | 371 | 90 | 455 | AF152758_1 polygalacturonase A [Actinidia chinensis] |
Swiss-Prot | P35336 | 0 | 5 | 371 | 90 | 455 | PGLR_ACTDE RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
RefSeq | XP_002313308.1 | 0 | 4 | 372 | 8 | 376 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517823.1 | 0 | 4 | 371 | 79 | 446 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529616.1 | 0 | 7 | 371 | 110 | 473 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 7e-22 | 86 | 290 | 102 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1hg8_A | 3e-16 | 93 | 340 | 69 | 327 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 2iq7_G | 4e-16 | 79 | 320 | 55 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 4e-16 | 79 | 320 | 55 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 4e-16 | 79 | 320 | 55 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EE093402 | 256 | 79 | 334 | 0 |
EX261408 | 270 | 4 | 273 | 0 |
EE091344 | 244 | 102 | 345 | 0 |
EC945774 | 241 | 104 | 344 | 0 |
EX261408 | 36 | 258 | 293 | 0.00004 |
Sequence Alignments (This image is cropped. Click for full image.) |
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