y
Basic Information | |
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Species | Manihot esculenta |
Cazyme ID | cassava4.1_006824m |
Family | GH28 |
Protein Properties | Length: 475 Molecular Weight: 51407 Isoelectric Point: 4.781 |
Chromosome | Chromosome/Scaffold: 03055 Start: 80660 End: 83460 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 88 | 417 | 0 |
TACGTPKSVFFVPPGHRYLVNATKFKGPCENKLVIQIDGTIVAPDEPNDWDPDLPRVWLEFSKLNGVLFQGNGVIDGSGRNWWESSCKKNKSNPCRGAPT ALTIDSSSSVRVRGLTIQNSQQMHFVISKSASVRVSEVLVSAPEDSPNTDGIHITGSTNVVLQDCKIGTGDDCISIVNASSGIKMKRIYCGPGHGVSIGS LGKDNSIGIVTKVVLDTALLKETTNGLRIKTWQGGNGYVRGIRFENVRMEDVANPIIIDQFYCDSPKVCSNQTSAVKISDIMYRNVTGTTKSANAMKFAC SDTVPCSNIVLSNINLEKKDGTVETYCNAA |
Full Sequence |
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Protein Sequence Length: 475 Download |
MDKLFIILFL GLLTVVHAGA ETMVYNDIGM LHELESFEID EENDVELFDT PSWTSERGGK 60 VLVNVDSFGA VGDGVSDDTQ AFVKAWETAC GTPKSVFFVP PGHRYLVNAT KFKGPCENKL 120 VIQIDGTIVA PDEPNDWDPD LPRVWLEFSK LNGVLFQGNG VIDGSGRNWW ESSCKKNKSN 180 PCRGAPTALT IDSSSSVRVR GLTIQNSQQM HFVISKSASV RVSEVLVSAP EDSPNTDGIH 240 ITGSTNVVLQ DCKIGTGDDC ISIVNASSGI KMKRIYCGPG HGVSIGSLGK DNSIGIVTKV 300 VLDTALLKET TNGLRIKTWQ GGNGYVRGIR FENVRMEDVA NPIIIDQFYC DSPKVCSNQT 360 SAVKISDIMY RNVTGTTKSA NAMKFACSDT VPCSNIVLSN INLEKKDGTV ETYCNAAQGF 420 GYGIVHPSAE CLTSQDRDYC RVGLTDIAQD YVTDQTKITQ LAESSSEAIV HTEL* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 2.0e-89 | 62 | 408 | 355 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 7.0e-96 | 63 | 404 | 346 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 3.0e-96 | 90 | 404 | 315 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-116 | 63 | 427 | 368 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-145 | 51 | 434 | 386 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_173760.2 | 0 | 16 | 469 | 18 | 460 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | XP_002299032.1 | 0 | 1 | 474 | 1 | 469 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002317091.1 | 0 | 30 | 474 | 1 | 447 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328587.1 | 0 | 1 | 439 | 1 | 440 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525360.1 | 0 | 1 | 474 | 1 | 510 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-22 | 158 | 378 | 115 | 338 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 2e-18 | 55 | 422 | 13 | 358 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 2iq7_G | 3e-18 | 162 | 403 | 80 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 3e-18 | 162 | 403 | 80 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 3e-18 | 162 | 403 | 80 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |