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Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma08g39340.1 |
Family | GH28 |
Protein Properties | Length: 539 Molecular Weight: 58553.2 Isoelectric Point: 7.8865 |
Chromosome | Chromosome/Scaffold: 08 Start: 38858711 End: 38864250 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 147 | 493 | 0 |
EACKVESSTMLVPADYVFFVGPISFSGPYCKPSIVFQLDGTIVAPTSPNAWGKGLLQWLEFSKLVGITIQGNGIIDGRGSVWWQDNPYDDPIDDEEKLIV PLNHTIGSPSPPLPIQSEMGGKMPSVKPTALRFYGSFNPTVTGITIQNSPQCHLKFDSCNGVMVHNVTISSPGDSPNTDGIHLQNSKDVLIYGSTMACGD DCISIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTRACVSNITVRDVNMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVELPIVIDQFYCDKRTCKNQ TSAVSLAGINYERIRGTYTVKPVHFACSDSLPCVDVSLTSVELKPIQ |
Full Sequence |
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Protein Sequence Length: 539 Download |
MSGLSFKGFT YMFLIAFLIW SFNFEACIAR RGKHWRQSRD VSASLYKKKG KNYSNAHNKN 60 HGGGSKSKPP SSHKGTPTLP KPPPQHKNTP SPPYPTPPSD DTPTTPPPKG YNGGGHSPTT 120 TFNVLDFGAK GDGKSDDTKA FQEAWAEACK VESSTMLVPA DYVFFVGPIS FSGPYCKPSI 180 VFQLDGTIVA PTSPNAWGKG LLQWLEFSKL VGITIQGNGI IDGRGSVWWQ DNPYDDPIDD 240 EEKLIVPLNH TIGSPSPPLP IQSEMGGKMP SVKPTALRFY GSFNPTVTGI TIQNSPQCHL 300 KFDSCNGVMV HNVTISSPGD SPNTDGIHLQ NSKDVLIYGS TMACGDDCIS IQTGCSNVYV 360 HNVNCGPGHG ISIGSLGKDN TRACVSNITV RDVNMHNTMN GVRIKTWQGG SGSVQGVLFS 420 NIQVSEVELP IVIDQFYCDK RTCKNQTSAV SLAGINYERI RGTYTVKPVH FACSDSLPCV 480 DVSLTSVELK PIQEKYHLYN PFCWQTYGEL KTPTVPPIDC LQIGKPTNNR IQTDHDLC* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 1.0e-80 | 115 | 490 | 381 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 4.0e-82 | 154 | 489 | 337 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03010 | PLN03010 | 2.0e-82 | 122 | 489 | 373 | + polygalacturonase | ||
PLN02218 | PLN02218 | 6.0e-91 | 120 | 490 | 376 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-107 | 122 | 517 | 401 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD62085.1 | 0 | 189 | 526 | 1 | 338 | polygalacturonase precursor [Glycine max] |
GenBank | ABK95830.1 | 0 | 1 | 538 | 4 | 516 | unknown [Populus trichocarpa] |
RefSeq | XP_002266600.1 | 0 | 1 | 538 | 1 | 505 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311773.1 | 0 | 1 | 538 | 4 | 517 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525361.1 | 0 | 1 | 538 | 1 | 519 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 5e-23 | 198 | 441 | 96 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 3jur_D | 8e-22 | 118 | 437 | 24 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 8e-22 | 118 | 437 | 24 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 8e-22 | 118 | 437 | 24 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 8e-22 | 118 | 437 | 24 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
ES800057 | 353 | 160 | 511 | 0 |
FE695613 | 287 | 227 | 513 | 0 |
GO844129 | 351 | 129 | 479 | 0 |
DW141437 | 288 | 202 | 489 | 0 |
EV525679 | 270 | 256 | 525 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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