y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10009994 |
Family | GH28 |
Protein Properties | Length: 502 Molecular Weight: 54393.1 Isoelectric Point: 6.367 |
Chromosome | Chromosome/Scaffold: 1630 Start: 160976 End: 163050 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 127 | 468 | 0 |
DAACQVGSSVIRVPKGFTFMIQSTIFTGPCQSGVIFQVDGTITPPDGPDSWPEKNSKRQWLVFYNVNEMSLVGGGGFNGRGQKWWDLPCKPHKVAINGTK PRGPCDSPVAIRFFMSSNLTVEGIRIKDSPQFNFRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVRIYNSIVSNGDDCVSIGSGCYDVDIRNVTCG PSHGISIGSLGNHNSRACVSNITVRDSTIRASDNGVRIKTWQGGSGAVSGVTFSNIHMDNVRNPIIIDQFYCLTKDCDNQTSAVHVSNVVYENIKGTYDI RSPPMHFGCSDSIPCTNLTISEVELLPAKGDVVSDAYCWNAY |
Full Sequence |
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Protein Sequence Length: 502 Download |
MELFPVLLTI NIIITATTIT SMTQARFHYH NHDHHHTKHN HPSQNGGLIS YISSPPTLPP 60 DDLDSPSPNS PQPPHPPSPK SATFFPPAPA PANNAYDDGQ GVLDVRRFGA IGDGITDDTI 120 AFKMAWDAAC QVGSSVIRVP KGFTFMIQST IFTGPCQSGV IFQVDGTITP PDGPDSWPEK 180 NSKRQWLVFY NVNEMSLVGG GGFNGRGQKW WDLPCKPHKV AINGTKPRGP CDSPVAIRFF 240 MSSNLTVEGI RIKDSPQFNF RFDNCKNVHI ESIHITAPAL SPNTDGIHIE NTNGVRIYNS 300 IVSNGDDCVS IGSGCYDVDI RNVTCGPSHG ISIGSLGNHN SRACVSNITV RDSTIRASDN 360 GVRIKTWQGG SGAVSGVTFS NIHMDNVRNP IIIDQFYCLT KDCDNQTSAV HVSNVVYENI 420 KGTYDIRSPP MHFGCSDSIP CTNLTISEVE LLPAKGDVVS DAYCWNAYGD LETLTIPPVS 480 CLMEGSPTRS ILADHTTDRC L* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 2.0e-80 | 104 | 478 | 382 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 1.0e-84 | 103 | 482 | 387 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-90 | 130 | 451 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-102 | 103 | 467 | 369 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-120 | 102 | 478 | 380 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37004.1 | 0 | 49 | 500 | 60 | 484 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002272733.1 | 0 | 49 | 500 | 41 | 456 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002302793.1 | 0 | 98 | 487 | 64 | 446 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002320271.1 | 0 | 101 | 500 | 41 | 438 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515219.1 | 0 | 23 | 500 | 22 | 537 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 7e-25 | 135 | 455 | 24 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 7e-25 | 135 | 455 | 24 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 7e-25 | 135 | 455 | 24 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 7e-25 | 135 | 455 | 24 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 7e-25 | 135 | 455 | 24 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DW479564 | 325 | 107 | 431 | 0 |
CX663441 | 275 | 213 | 487 | 0 |
DY277859 | 357 | 102 | 455 | 0 |
EV124391 | 242 | 225 | 465 | 0 |
DV135481 | 290 | 112 | 399 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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