y
Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi2g18050.1 |
Family | GH28 |
Protein Properties | Length: 438 Molecular Weight: 46426.3 Isoelectric Point: 6.867 |
Chromosome | Chromosome/Scaffold: 2 Start: 16044480 End: 16046837 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 53 | 406 | 0 |
NAACATLDKTVLNVPAGRSYQVWPVTLAGPCREEIKLFISGNIVAPESPDEWERRDGEKWLHFYRVQDLSVSGGGVIDGRGQQWWEQSCKGKHHGGSSSD NNNDKHCTPQAAPKALHFEECHGVRVQGVTVQNSQQQHLTFTRCTNARASFLRVSSPESSPATDGIHLVDSKNVQLADNLISTGGDCVSMVGNCTDVRLR SISCGPGSGISIGTIGETPAADRLEKIKIDTVFMTNTSNGVRIKTWQDGCGYARKVKFQSIAMKNVSNPIVIDQYRTSSHPAVPCGSTPGMSAVAVEKID YEGIAGTSATKRAVTFACSVAVPCRRVSLRNVNLTLVAGHGHRAPSAYCRAASG |
Full Sequence |
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Protein Sequence Length: 438 Download |
MAISPARLAA LGVALLLLLP EAAEPRVLLS VDDFGAVGDG IADDTQALLD AWNAACATLD 60 KTVLNVPAGR SYQVWPVTLA GPCREEIKLF ISGNIVAPES PDEWERRDGE KWLHFYRVQD 120 LSVSGGGVID GRGQQWWEQS CKGKHHGGSS SDNNNDKHCT PQAAPKALHF EECHGVRVQG 180 VTVQNSQQQH LTFTRCTNAR ASFLRVSSPE SSPATDGIHL VDSKNVQLAD NLISTGGDCV 240 SMVGNCTDVR LRSISCGPGS GISIGTIGET PAADRLEKIK IDTVFMTNTS NGVRIKTWQD 300 GCGYARKVKF QSIAMKNVSN PIVIDQYRTS SHPAVPCGST PGMSAVAVEK IDYEGIAGTS 360 ATKRAVTFAC SVAVPCRRVS LRNVNLTLVA GHGHRAPSAY CRAASGKSTG VVVPESCLAT 420 LPRLQGGAAA DDDYESE* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 2.0e-62 | 30 | 409 | 385 | + polygalacturonase | ||
PLN02188 | PLN02188 | 3.0e-64 | 31 | 417 | 393 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 3.0e-65 | 31 | 424 | 395 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 3.0e-72 | 30 | 415 | 389 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 8.0e-114 | 31 | 419 | 389 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAU43991.1 | 0 | 17 | 428 | 23 | 418 | unknown protein [Oryza sativa Japonica Group] |
GenBank | EAY98883.1 | 0 | 21 | 425 | 22 | 415 | hypothetical protein OsI_20839 [Oryza sativa Indica Group] |
GenBank | EEC79626.1 | 0 | 17 | 428 | 23 | 418 | hypothetical protein OsI_20838 [Oryza sativa Indica Group] |
GenBank | EEE64554.1 | 0 | 21 | 425 | 28 | 421 | hypothetical protein OsJ_19406 [Oryza sativa Japonica Group] |
RefSeq | NP_001056199.1 | 0 | 21 | 425 | 28 | 421 | Os05g0542900 [Oryza sativa (japonica cultivar-group)] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-18 | 123 | 387 | 113 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.000000000003 | 119 | 359 | 68 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000003 | 119 | 359 | 68 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000000000003 | 119 | 359 | 68 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.000000000003 | 119 | 359 | 68 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |