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Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 471186 |
Family | GH28 |
Protein Properties | Length: 382 Molecular Weight: 41600.5 Isoelectric Point: 6.5644 |
Chromosome | Chromosome/Scaffold: 1 Start: 4161240 End: 4162900 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 2 | 347 | 0 |
MLVPPEYTYLVGPISFSGPYCQANIVFQLDGTIIAPTDSKTWGKGLMWWIDFTKLKGIKVQGKGVIDGRGSGWWQQDDPFSDGETKLIIPLNNSVHQNPP MPIRSELDGRMPSTKPTALRFSGSLGVEVTGITIQNSPQCHLKFDDCLGVVVHDIAVSSPGDSPNTDGIHLQNTRDVLIHSTTLACGDDCISIQTGCSNV YVHNVNCGPGHGISIGSLGKEGTKACVSNITVRDVAMHNTMTGVRIKTWQGGVGSVKGIIFSNIQLNEVQIPIMIDQFYCDHSKCKNQTSAVAVEGVTYE RIKGTYTVKPVHFACSDNFPCVDVQLSSIELKPVQEKYRMSDAYCW |
Full Sequence |
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Protein Sequence Length: 382 Download |
MMLVPPEYTY LVGPISFSGP YCQANIVFQL DGTIIAPTDS KTWGKGLMWW IDFTKLKGIK 60 VQGKGVIDGR GSGWWQQDDP FSDGETKLII PLNNSVHQNP PMPIRSELDG RMPSTKPTAL 120 RFSGSLGVEV TGITIQNSPQ CHLKFDDCLG VVVHDIAVSS PGDSPNTDGI HLQNTRDVLI 180 HSTTLACGDD CISIQTGCSN VYVHNVNCGP GHGISIGSLG KEGTKACVSN ITVRDVAMHN 240 TMTGVRIKTW QGGVGSVKGI IFSNIQLNEV QIPIMIDQFY CDHSKCKNQT SAVAVEGVTY 300 ERIKGTYTVK PVHFACSDNF PCVDVQLSSI ELKPVQEKYR MSDAYCWQTF GELNTPTLPP 360 IDCLQIGKPP RNKVQSDHDV C* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 1.0e-65 | 2 | 333 | 336 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 3.0e-66 | 2 | 381 | 385 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 2.0e-77 | 2 | 333 | 335 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 4.0e-80 | 6 | 332 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 4.0e-92 | 2 | 360 | 363 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF17670.1 | 0 | 1 | 381 | 152 | 542 | AC009398_19 F20B24.8 [Arabidopsis thaliana] |
GenBank | AAK63956.1 | 0 | 2 | 381 | 1 | 380 | At1g10640/F20B24_8 [Arabidopsis thaliana] |
GenBank | AAL31197.1 | 0 | 2 | 381 | 91 | 473 | At1g60590/F8A5_12 [Arabidopsis thaliana] |
RefSeq | NP_563875.6 | 0 | 1 | 381 | 152 | 532 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_564758.2 | 0 | 2 | 381 | 157 | 539 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 5e-20 | 44 | 280 | 96 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 7e-18 | 129 | 343 | 112 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 7e-18 | 129 | 343 | 112 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 7e-18 | 129 | 343 | 112 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 7e-18 | 129 | 343 | 112 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EX073104 | 283 | 1 | 283 | 0 |
ES800057 | 351 | 7 | 353 | 0 |
EV525679 | 276 | 93 | 368 | 0 |
EX073723 | 257 | 1 | 257 | 0 |
EX075575 | 254 | 1 | 254 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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