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Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000278254 |
Family | GH28 |
Protein Properties | Length: 1125 Molecular Weight: 123425 Isoelectric Point: 5.1768 |
Chromosome | Chromosome/Scaffold: 006260462 Start: 9434 End: 14852 |
Description | Tetratricopeptide repeat (TPR)-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 764 | 1086 | 0 |
ACNTTKAVFLVPQGRRYLVNATKFQGPCADNLIIQIEGTIVAPDEPNNWDPNFPRTWLDFTKLNGVLFQGHGVIDGSGSKWWAASCKTNKTNAFTIDKSS AINVKGITIKNAQQMNFVISQCDAVRVNAVQVSAPGDSPNTDGIHITASTNVILQDCKIGTGDDCVSIVNGTSGIKMKRIFCGPGHGISIGSLGKDNSTA MVTKVVLDTAYLRETTNGLRIKTWQGGAGYVRGVRFQNVKMENVSNPIIIDQFYCDSPKTCQNLTSAVQITQVMYKNIYGTTKSAKAMKFACSDTVPCRN IVLTDVNLEKEDGQVETYCNSAQ |
Full Sequence |
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Protein Sequence Length: 1125 Download |
MLSVSLRRGA WPMRITRLLS SVRFSTNFNV ATASSTSSSL RLNSYFEPSV RDLVYSINRK 60 IDGLIKSGDL NTALKLFDEM PVYDVVTYNM LISGHGRHGF PEQAFHFYAE MVSQGIRESA 120 STFSSVLGVC NDAGFCREGM QVHCRVVSLG FGLNLYVGGS LVDLYLHMGL DNVALKLFDE 180 LPYRNVAVWN LLLRGFCELG RLDELCGVFS TMEFDGVDPN GLTYCYLIRG CSNGRLLDEG 240 KQLHCLVVKD GWVESNVFVA NALVDLYSAC GSLIDATEAF EAIQMEDVIS WNSIIWVCAE 300 NGLLLDALKL FVEMQFWEKR PSIRSFIGFL NLASRTENIE LGKQMHSYVL KSGFGHGGSV 360 HVQSALIDMY GKCVDIESSV SIYESVGEKT LESCNSLMTS LLHCGVIEDV VEMFGLMVDK 420 GIGLDEVTLS TTLKALSISA LASSGSCKLV HCCAIKSGFG SDIAVSCSLI DAYARCGHVK 480 LSRQVFEQLP SPNVICFTSL IHGYARNGTG SEGLDLLQEM ISKGLKPDQV TILGVLSGCN 540 HSGLVKEARF VFDSMKKLYD ISPDRKHFSC MVDLLGRAGM LEEAEDLLQQ APVNGDCVMW 600 SSLLRSCRIH KNETVGRRTV KTLLLELDVE DPEIWLQASN FYSEIGEFDT AMQIREIAIA 660 RKVKWEMGHS LIETSMDNLF AVFVFGMLIA VFGVARDVVC DNMSMLHELE SFNIEEDNEL 720 NVFDIPTWKS ERGSKTLVNV DSFGAAGDGV SDDTQAFQKA WGIACNTTKA VFLVPQGRRY 780 LVNATKFQGP CADNLIIQIE GTIVAPDEPN NWDPNFPRTW LDFTKLNGVL FQGHGVIDGS 840 GSKWWAASCK TNKTNAFTID KSSAINVKGI TIKNAQQMNF VISQCDAVRV NAVQVSAPGD 900 SPNTDGIHIT ASTNVILQDC KIGTGDDCVS IVNGTSGIKM KRIFCGPGHG ISIGSLGKDN 960 STAMVTKVVL DTAYLRETTN GLRIKTWQGG AGYVRGVRFQ NVKMENVSNP IIIDQFYCDS 1020 PKTCQNLTSA VQITQVMYKN IYGTTKSAKA MKFACSDTVP CRNIVLTDVN LEKEDGQVET 1080 YCNSAQGFGY GIVHPSAECL NSHDKETSEA ELADLTTADI VHTEL 1140 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 3.0e-85 | 739 | 1112 | 377 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-90 | 766 | 1072 | 312 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 4.0e-93 | 734 | 1116 | 391 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 2.0e-107 | 734 | 1095 | 373 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 5.0e-130 | 734 | 1102 | 378 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF79584.1 | 0 | 8 | 1114 | 2 | 1155 | AC007945_4 F28C11.9 [Arabidopsis thaliana] |
EMBL | CAN65318.1 | 0 | 40 | 1125 | 31 | 1052 | hypothetical protein [Vitis vinifera] |
EMBL | CBI28554.1 | 0 | 40 | 1125 | 31 | 1111 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_173759.2 | 0 | 8 | 670 | 2 | 660 | unknown protein [Arabidopsis thaliana] |
RefSeq | XP_002328586.1 | 0 | 40 | 675 | 45 | 678 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 7e-21 | 833 | 1017 | 115 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 8e-19 | 727 | 1090 | 10 | 358 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 2iq7_G | 4e-16 | 826 | 1082 | 72 | 328 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 4e-16 | 826 | 1082 | 72 | 328 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 4e-16 | 826 | 1082 | 72 | 328 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FE686036 | 307 | 673 | 969 | 0 |
DY668123 | 238 | 674 | 904 | 0 |
EV271942 | 220 | 751 | 963 | 0 |
FP038137 | 216 | 812 | 1020 | 0 |
GR929886 | 272 | 676 | 939 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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