y
Basic Information | |
---|---|
Species | Phaseolus vulgaris |
Cazyme ID | Phvul.008G157500.1 |
Family | GH28 |
Protein Properties | Length: 398 Molecular Weight: 43371.9 Isoelectric Point: 9.1807 |
Chromosome | Chromosome/Scaffold: 08 Start: 39892415 End: 39897647 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 55 | 384 | 0 |
DACNASYGTPTLLIPEEKTFMLQPLLFSGPCNPAIVHIKLKGTITAPKKIKGWKLGKGTRKAWIRFRRINGLVIRGGGQIDGQGAPWWKSYFNTEINRPT ALHFSECNNLFLSGLTHINSPKNHISLNRCNGSFISKLHFIAPDQSPNTDGIDISYSSNILIKNSKMETGDDCIAINHGSSFISIIGVYCGPGHGISIGS LGKNGAHQTVEEIYVRNCTFNRTTNGARIKTWIGGQGYARKITFKDIVLVETTNPVIIDQQYNPYDSVEAVRVSDVSYHNVRGTSSSAHAIKLHCDKNIG CTNIVLKGINITTIAGKKTYASCKNVKGVC |
Full Sequence |
---|
Protein Sequence Length: 398 Download |
MKLLFVVLGM CVVASPCVWG RMELDAGLRF NVIDYGAMGN GETDDSQAFL KAWTDACNAS 60 YGTPTLLIPE EKTFMLQPLL FSGPCNPAIV HIKLKGTITA PKKIKGWKLG KGTRKAWIRF 120 RRINGLVIRG GGQIDGQGAP WWKSYFNTEI NRPTALHFSE CNNLFLSGLT HINSPKNHIS 180 LNRCNGSFIS KLHFIAPDQS PNTDGIDISY SSNILIKNSK METGDDCIAI NHGSSFISII 240 GVYCGPGHGI SIGSLGKNGA HQTVEEIYVR NCTFNRTTNG ARIKTWIGGQ GYARKITFKD 300 IVLVETTNPV IIDQQYNPYD SVEAVRVSDV SYHNVRGTSS SAHAIKLHCD KNIGCTNIVL 360 KGINITTIAG KKTYASCKNV KGVCSFCNPH VPCLSHS* 420 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 6.0e-87 | 60 | 385 | 333 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 4.0e-93 | 30 | 397 | 378 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 3.0e-97 | 3 | 381 | 393 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 1.0e-118 | 30 | 397 | 378 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 4.0e-127 | 27 | 385 | 364 | + polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 1 | 396 | 1 | 398 | PGN [Glycine max] |
GenBank | ABC75354.1 | 0 | 1 | 394 | 1 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ABO81149.1 | 0 | 33 | 396 | 1 | 370 | Glycoside hydrolase, family 28 [Medicago truncatula] |
RefSeq | XP_002324855.1 | 0 | 1 | 397 | 2 | 397 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 1 | 397 | 2 | 395 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 2e-23 | 120 | 380 | 55 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-23 | 120 | 380 | 55 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-23 | 120 | 380 | 55 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-23 | 120 | 380 | 55 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 2e-23 | 120 | 380 | 55 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |