y
Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a022836m |
Family | GH28 |
Protein Properties | Length: 412 Molecular Weight: 44291.4 Isoelectric Point: 7.6149 |
Chromosome | Chromosome/Scaffold: 54 Start: 1173699 End: 1176491 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 61 | 392 | 0 |
VACSIPSTVKIVIPKGKSYLVKPIDFPGPCESNVTLRISGTVVAPRDPEVWNGSNVHKWLYFHGVKHLTVDGGGIIDGKGQIWWARSCKINESNPCTHAP TAITFHKCNNLKVRDITLVNSQQMHVAFTNCVHVAVSGVRVTAPADSPNTDGVHISASTHFELKDAIIGTGDDCISIVGNSSRVRIKNIVCGPGHGISIG SLGKSNSSAAVRDVVVDGAVLTNTENGVRIKTWQGGSGFARKITFQNIQMHNVSNPIIIDQYYCDSPIPCLNQTSAVIIDSVSFRNIKGTSATEDAIVLS CSESHPCKKIYLENIQLVSFSEMIIAQSFCWE |
Full Sequence |
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Protein Sequence Length: 412 Download |
IYLLSNIPNS NGFDPIIQLP SSGLYENNFS RSKVVLNIDD FGANGDGITD NTKIMQNVWK 60 VACSIPSTVK IVIPKGKSYL VKPIDFPGPC ESNVTLRISG TVVAPRDPEV WNGSNVHKWL 120 YFHGVKHLTV DGGGIIDGKG QIWWARSCKI NESNPCTHAP TAITFHKCNN LKVRDITLVN 180 SQQMHVAFTN CVHVAVSGVR VTAPADSPNT DGVHISASTH FELKDAIIGT GDDCISIVGN 240 SSRVRIKNIV CGPGHGISIG SLGKSNSSAA VRDVVVDGAV LTNTENGVRI KTWQGGSGFA 300 RKITFQNIQM HNVSNPIIID QYYCDSPIPC LNQTSAVIID SVSFRNIKGT SATEDAIVLS 360 CSESHPCKKI YLENIQLVSF SEMIIAQSFC WEVYGTSSGS ICPPSCISSV L* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 5.0e-80 | 30 | 391 | 363 | + polygalacturonase | ||
PLN02188 | PLN02188 | 4.0e-86 | 32 | 377 | 349 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 9.0e-88 | 63 | 379 | 317 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-111 | 31 | 377 | 349 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 0 | 1 | 394 | 394 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF61444.1 | 0 | 9 | 407 | 38 | 433 | AF138858_1 polygalacturonase [Solanum lycopersicum] |
GenBank | ABM67700.1 | 0 | 1 | 408 | 21 | 426 | polygalacturonase [Citrus sinensis] |
EMBL | CBI36284.1 | 0 | 1 | 409 | 18 | 423 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002281827.1 | 0 | 1 | 409 | 12 | 417 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002517603.1 | 0 | 13 | 408 | 12 | 406 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 8e-25 | 132 | 381 | 115 | 365 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 6e-18 | 120 | 350 | 62 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 6e-18 | 120 | 350 | 62 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 6e-18 | 120 | 350 | 62 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 6e-18 | 120 | 350 | 62 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EY133898 | 230 | 143 | 372 | 0 |
EC954904 | 290 | 9 | 298 | 0 |
EB680983 | 261 | 1 | 261 | 0 |
FG140031 | 236 | 30 | 265 | 0 |
GD094447 | 225 | 31 | 255 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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