y
Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.011G015100.1 |
Family | GH28 |
Protein Properties | Length: 441 Molecular Weight: 48713.2 Isoelectric Point: 8.6616 |
Chromosome | Chromosome/Scaffold: 11 Start: 1202722 End: 1205861 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 96 | 427 | 0 |
EACSRGGVLVVPENRIYRLKPITFSGPCRPNTAFMLYGTIEAWTQMSAYQEDRQHWIIFDSVSNFRVGGGGTFNGKGKKWWQNSCKVTTNLPCNDGPRPK AVTFFQCKNLEVRNLMFKDAQQMHVTFEGCFNVIASNLVIRAPGDSPNTDGIHVADTQNIVISNSDIGTGDDCISIISGSQNVRATDITCGPGHGISIGS LGADNSEAEVSNVVVNRATLKGTTNGVRIKTWQGGSGYARNIKFLNIMMQNVTNPIIIDQYYCDQAKACQEQNSAVQLSNVLYQNIRGTSASEVAIKFDC SRAVPCRQIYLQDVILEPQGRGGTIATCENVR |
Full Sequence |
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Protein Sequence Length: 441 Download |
MFPQTPTFSL FIVLSSIVLC NGYYIEEPLY KTNYKHYPMH DGRFMKRRHE HFGLITRANR 60 VAPLSSRQSG TVNVDDFGAK ADGRDNTKAF GKAWSEACSR GGVLVVPENR IYRLKPITFS 120 GPCRPNTAFM LYGTIEAWTQ MSAYQEDRQH WIIFDSVSNF RVGGGGTFNG KGKKWWQNSC 180 KVTTNLPCND GPRPKAVTFF QCKNLEVRNL MFKDAQQMHV TFEGCFNVIA SNLVIRAPGD 240 SPNTDGIHVA DTQNIVISNS DIGTGDDCIS IISGSQNVRA TDITCGPGHG ISIGSLGADN 300 SEAEVSNVVV NRATLKGTTN GVRIKTWQGG SGYARNIKFL NIMMQNVTNP IIIDQYYCDQ 360 AKACQEQNSA VQLSNVLYQN IRGTSASEVA IKFDCSRAVP CRQIYLQDVI LEPQGRGGTI 420 ATCENVRYVN RGKFFPQCTP * 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 1.0e-85 | 69 | 427 | 368 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 8.0e-90 | 71 | 436 | 376 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 5.0e-103 | 98 | 426 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-118 | 74 | 436 | 367 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-136 | 7 | 439 | 438 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABC70314.1 | 0 | 1 | 440 | 1 | 440 | polygalacturonase precursor [Glycine max] |
RefSeq | XP_002308956.1 | 0 | 24 | 438 | 21 | 442 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002313308.1 | 0 | 62 | 439 | 1 | 376 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517823.1 | 0 | 45 | 438 | 55 | 446 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529616.1 | 0 | 65 | 438 | 101 | 473 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 9e-23 | 156 | 411 | 107 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 2e-19 | 58 | 425 | 3 | 352 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1nhc_F | 3e-16 | 165 | 426 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-16 | 165 | 426 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-16 | 165 | 426 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |