y
Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma10g11480.2 |
Family | GH28 |
Protein Properties | Length: 439 Molecular Weight: 48323.9 Isoelectric Point: 8.9793 |
Chromosome | Chromosome/Scaffold: 10 Start: 11665108 End: 11670068 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 93 | 425 | 0 |
EVCSTGGIVVVPEEKIFHLKPITFSGPCQPNIAFRVYGTIKAWPKMSAYQNDRLHWIKFENVTNLRVDGGGTINGNGRKWWENSCKRNKNLPCKPAPTAV TFYQCNNLKVTNLRFKNAQQMHIRFQKCNNVAASNLVVRAPGNSPNTDGIHVTETKNILISNSIIGTGDDCISIVSGSQNVRAIDIKCGPGHGISIGSLG AGDSKAQVSNVLVNRATLTRTTNGVRIKTWQGGSGYAENIIFVNIAMRNVTNPIIVDQNYCDQEKPCHEKDSAVKLSNIMYQNIRGTSASEVAIKFNCSK TVPCKGIYLQDVILTPEGHGGCSSTIATCENVR |
Full Sequence |
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Protein Sequence Length: 439 Download |
MRMSPQSVAL SLFITMFVSF GVCFGSFLED TYHLTNYQRY SMKPNNEHFG IMTRAYGSTP 60 STRSQRRINV DDYGAKTIDG RDDTEAFEKA WDEVCSTGGI VVVPEEKIFH LKPITFSGPC 120 QPNIAFRVYG TIKAWPKMSA YQNDRLHWIK FENVTNLRVD GGGTINGNGR KWWENSCKRN 180 KNLPCKPAPT AVTFYQCNNL KVTNLRFKNA QQMHIRFQKC NNVAASNLVV RAPGNSPNTD 240 GIHVTETKNI LISNSIIGTG DDCISIVSGS QNVRAIDIKC GPGHGISIGS LGAGDSKAQV 300 SNVLVNRATL TRTTNGVRIK TWQGGSGYAE NIIFVNIAMR NVTNPIIVDQ NYCDQEKPCH 360 EKDSAVKLSN IMYQNIRGTS ASEVAIKFNC SKTVPCKGIY LQDVILTPEG HGGCSSTIAT 420 CENVRYVNQG KVFPPCST* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 2.0e-94 | 64 | 425 | 367 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 4.0e-103 | 68 | 435 | 373 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 2.0e-114 | 95 | 424 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 3.0e-138 | 63 | 435 | 377 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-147 | 20 | 437 | 428 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC26512.1 | 0 | 10 | 436 | 13 | 458 | polygalacturonase precursor [Cucumis melo] |
GenBank | AAK81876.1 | 0 | 3 | 437 | 1 | 444 | polygalacturonase PG1 [Vitis vinifera] |
GenBank | ABC70314.1 | 0 | 3 | 437 | 1 | 439 | polygalacturonase precursor [Glycine max] |
RefSeq | XP_002313308.1 | 0 | 64 | 437 | 5 | 376 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517823.1 | 0 | 23 | 436 | 23 | 446 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 8e-23 | 148 | 356 | 102 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1hg8_A | 3e-20 | 155 | 410 | 69 | 335 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1nhc_F | 5e-19 | 162 | 379 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 5e-19 | 162 | 379 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 5e-19 | 162 | 379 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |