y
Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.005G175800.1 |
Family | GH28 |
Protein Properties | Length: 449 Molecular Weight: 49647.8 Isoelectric Point: 8.1463 |
Chromosome | Chromosome/Scaffold: 05 Start: 39900812 End: 39903999 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 81 | 414 | 0 |
ACSLAGIINLVFPFGKTFLVHPVDIGGPCRSKITLVISGTIVAPQDPAVWLGLNQRKWLYFHGVNHLTVDGGGSINGMGEEWWARSCKINTKNPCHPAPT ALTFHKCKDLTIRNLMLINSQQMHLSFTNCMRVLASHLKVLAPAFSPNTDGIHISATKGVQVRDTVIRTGDDCISIVRNSSRVWIRNISCGPGHGISIGS LGKSKKWETVQNVIVDGAYLYNTDNGVRIKTWQGGTGFASKITFQNILMENVSNPILIDQYYCDSQHPCENQTSAVRVENISFIDIQGTSATDEAIKFAC SDVSPCEGLYLENIFLVSCFGGNTSSFCWQAHGS |
Full Sequence |
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Protein Sequence Length: 449 Download |
MKNLRYCFSW AFIIIFIHVN VLVTPYLTGA EGFDSVIQHP RSRWRRSRTR TKWVLYVDDY 60 GAKGDGFHND TEAFLGAWGI ACSLAGIINL VFPFGKTFLV HPVDIGGPCR SKITLVISGT 120 IVAPQDPAVW LGLNQRKWLY FHGVNHLTVD GGGSINGMGE EWWARSCKIN TKNPCHPAPT 180 ALTFHKCKDL TIRNLMLINS QQMHLSFTNC MRVLASHLKV LAPAFSPNTD GIHISATKGV 240 QVRDTVIRTG DDCISIVRNS SRVWIRNISC GPGHGISIGS LGKSKKWETV QNVIVDGAYL 300 YNTDNGVRIK TWQGGTGFAS KITFQNILME NVSNPILIDQ YYCDSQHPCE NQTSAVRVEN 360 ISFIDIQGTS ATDEAIKFAC SDVSPCEGLY LENIFLVSCF GGNTSSFCWQ AHGSARGFLY 420 PPPTCFSTSD DFIRQNVLVE SNPVIHSI* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 8.0e-91 | 10 | 423 | 418 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 3.0e-91 | 54 | 421 | 369 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 6.0e-102 | 82 | 408 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 5.0e-124 | 57 | 421 | 367 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 0 | 1 | 437 | 439 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD28401.1 | 0 | 30 | 448 | 32 | 451 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ABM67700.1 | 0 | 1 | 435 | 1 | 434 | polygalacturonase [Citrus sinensis] |
EMBL | CBI36284.1 | 0 | 19 | 436 | 16 | 431 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002299601.1 | 0 | 19 | 437 | 16 | 439 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517603.1 | 0 | 22 | 441 | 1 | 420 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 9e-25 | 148 | 342 | 118 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 5e-19 | 113 | 372 | 36 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 5e-19 | 113 | 372 | 36 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 5e-19 | 113 | 372 | 36 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 5e-19 | 113 | 372 | 36 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |