y
Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr1g013740.1 |
Family | GH28 |
Protein Properties | Length: 403 Molecular Weight: 43979.2 Isoelectric Point: 8.2226 |
Chromosome | Chromosome/Scaffold: 1 Start: 3503084 End: 3507036 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 59 | 388 | 0 |
KALCRGRYGNTLVVPNGRSFFVRPTLNFSGPCHSKNINIKIMGNILAPKRSDWGRECSLYWIHFFNIHGLILDGSGVINGNGEDWWSKVKGTGGCPRIPT ALQFDKCDGLQITGLTHINGPGPHIAVTDSQDITISHIHINSPKESHNTDGIDLTRAIRVNVHDIPIRSGDDCIAIKGGSQFVNVSQVTCGPGHGISVGS LGGHGSPEFVEHLRIKNCTFNGGDSAVKIKTWPGGKGYAKDIIFEDIILYQTNYPVYIDQHYMKTPEQHQAVKISNIKFSNIHGTCIDENAIVLDCAKIG CYDITLNQIKITSINRKKPASVKCKNVHGT |
Full Sequence |
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Protein Sequence Length: 403 Download |
MEVRNFKFSD LLIVYILILS IASCNSWVVN GEDTLDVIHY GAKGDGRTDD SKAFVEAFKA 60 LCRGRYGNTL VVPNGRSFFV RPTLNFSGPC HSKNINIKIM GNILAPKRSD WGRECSLYWI 120 HFFNIHGLIL DGSGVINGNG EDWWSKVKGT GGCPRIPTAL QFDKCDGLQI TGLTHINGPG 180 PHIAVTDSQD ITISHIHINS PKESHNTDGI DLTRAIRVNV HDIPIRSGDD CIAIKGGSQF 240 VNVSQVTCGP GHGISVGSLG GHGSPEFVEH LRIKNCTFNG GDSAVKIKTW PGGKGYAKDI 300 IFEDIILYQT NYPVYIDQHY MKTPEQHQAV KISNIKFSNI HGTCIDENAI VLDCAKIGCY 360 DITLNQIKIT SINRKKPASV KCKNVHGTAT NIISPKGSCV NH* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 1.0e-73 | 62 | 389 | 333 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-77 | 2 | 396 | 405 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-82 | 32 | 395 | 373 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-88 | 33 | 390 | 367 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 1.0e-95 | 28 | 391 | 371 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 11 | 402 | 3 | 398 | PGN [Glycine max] |
GenBank | ABC75354.1 | 0 | 12 | 400 | 4 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
EMBL | CBI36306.1 | 0 | 6 | 400 | 92 | 493 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002324855.1 | 0 | 16 | 389 | 8 | 384 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 17 | 401 | 8 | 393 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1czf_B | 6e-22 | 135 | 390 | 106 | 361 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 6e-22 | 135 | 390 | 106 | 361 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1ib4_B | 1e-21 | 136 | 385 | 84 | 333 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1ib4_A | 1e-21 | 136 | 385 | 84 | 333 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1ia5_A | 1e-21 | 136 | 385 | 84 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |