y
Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr3g084380.1 |
Family | GH28 |
Protein Properties | Length: 405 Molecular Weight: 43228.6 Isoelectric Point: 5.1843 |
Chromosome | Chromosome/Scaffold: 3 Start: 27371416 End: 27374175 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 55 | 386 | 0 |
ACGTSESTPSMTIPEGKTFLLQPLVFKGPCKSTNIIVELKGNITAPKDIESWNFTVEKQRKIWIQFSKISGLVVNGEGNIDGQGSPWWDKFGGKGQEKFR PTALRFLDCQALTLSNLNHMNSPKNHISVDSCKNASIFNIHITAPPTSPNTDGIDISQSTNIAIMNSTIETGDDCIAINNGSSVITITGTFCGPGHGISV GSLGKDNSYATVEDVRVQNCTFTGTSNGGRIKTFEGGSGYARNITYEDIILNEVKNPVIIDQAYNPNADSAVEISDVTYSNIRGTSVGEYAIELKCELNI GCNNIVLDHINITRADGGKAGVVCVGGHGNSS |
Full Sequence |
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Protein Sequence Length: 405 Download |
MKGLYVLFML VIASHSVSSR ITPNTGSTFD VLTYGAIGDG QTDDSNAFLK VFNDACGTSE 60 STPSMTIPEG KTFLLQPLVF KGPCKSTNII VELKGNITAP KDIESWNFTV EKQRKIWIQF 120 SKISGLVVNG EGNIDGQGSP WWDKFGGKGQ EKFRPTALRF LDCQALTLSN LNHMNSPKNH 180 ISVDSCKNAS IFNIHITAPP TSPNTDGIDI SQSTNIAIMN STIETGDDCI AINNGSSVIT 240 ITGTFCGPGH GISVGSLGKD NSYATVEDVR VQNCTFTGTS NGGRIKTFEG GSGYARNITY 300 EDIILNEVKN PVIIDQAYNP NADSAVEISD VTYSNIRGTS VGEYAIELKC ELNIGCNNIV 360 LDHINITRAD GGKAGVVCVG GHGNSSSCNP AVPCLTNISA IWWY* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 8.0e-88 | 65 | 378 | 320 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-90 | 4 | 388 | 402 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 6.0e-96 | 15 | 396 | 391 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 5.0e-111 | 27 | 395 | 381 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 9.0e-126 | 26 | 400 | 381 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 1 | 397 | 1 | 398 | PGN [Glycine max] |
GenBank | ABC75354.1 | 0 | 1 | 395 | 1 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
EMBL | CAA20037.1 | 0 | 26 | 397 | 11 | 370 | putative polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_195292.2 | 0 | 26 | 397 | 21 | 390 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002324855.1 | 0 | 6 | 396 | 4 | 395 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 6e-26 | 134 | 339 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 6e-26 | 134 | 339 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 6e-26 | 134 | 339 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 6e-26 | 134 | 339 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 6e-26 | 134 | 339 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |