y
Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.010G038100.1 |
Family | GH28 |
Protein Properties | Length: 376 Molecular Weight: 40139.3 Isoelectric Point: 6.2391 |
Chromosome | Chromosome/Scaffold: 10 Start: 5594993 End: 5599441 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 51 | 352 | 0 |
WQGVCEDQGPASLLIPLSKIFLVKRLNISGPCKTPNVGIKFEGKIVAPSMNEWVGDSFSWIQIFNVNGLTIDADGGSIDGNGSTWWEKCRKCRRPTSLRF HGCNGLTVKSLSMSNSPGAHISVNGLDGALFSQININSPPNSPNTDGFDIAGSKNVAIEDSTLATGDDCIAINGGCSYINATRLVCQGGHGISIGSLGRN QSHETVEEVHVWNCSFIDTTNGARIKTWPGGSGYARKITYEEIILEDVQNSIIIDQFYGIKTPNEVPNKVEDAVKVSEVTFRGFKGTSASAKAINLNCSP SG |
Full Sequence |
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Protein Sequence Length: 376 Download |
MQRLITCILI LGFISATFSN AETQVKFFNV MDFGAHGDGT SDDSNAIAKA WQGVCEDQGP 60 ASLLIPLSKI FLVKRLNISG PCKTPNVGIK FEGKIVAPSM NEWVGDSFSW IQIFNVNGLT 120 IDADGGSIDG NGSTWWEKCR KCRRPTSLRF HGCNGLTVKS LSMSNSPGAH ISVNGLDGAL 180 FSQININSPP NSPNTDGFDI AGSKNVAIED STLATGDDCI AINGGCSYIN ATRLVCQGGH 240 GISIGSLGRN QSHETVEEVH VWNCSFIDTT NGARIKTWPG GSGYARKITY EEIILEDVQN 300 SIIIDQFYGI KTPNEVPNKV EDAVKVSEVT FRGFKGTSAS AKAINLNCSP SGSFAFCKNM 360 VNGTFVDTVP KVSCV* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 4.0e-65 | 10 | 349 | 348 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 4.0e-68 | 55 | 349 | 301 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-72 | 26 | 351 | 337 | + Probable polygalacturonase | ||
PLN03010 | PLN03010 | 4.0e-83 | 28 | 374 | 355 | + polygalacturonase | ||
PLN03003 | PLN03003 | 5.0e-89 | 17 | 349 | 333 | + Probable polygalacturonase At3g15720 |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 28 | 375 | 30 | 396 | PGN [Glycine max] |
GenBank | ABC75354.1 | 0 | 27 | 361 | 22 | 359 | Glycoside hydrolase, family 28 [Medicago truncatula] |
RefSeq | NP_001078162.1 | 0 | 28 | 349 | 23 | 338 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_566524.1 | 0 | 28 | 349 | 24 | 342 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002324855.1 | 0 | 1 | 367 | 1 | 368 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 8e-26 | 89 | 337 | 45 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 8e-26 | 89 | 337 | 45 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 8e-26 | 89 | 337 | 45 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 8e-26 | 89 | 337 | 45 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 8e-26 | 89 | 337 | 45 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |