y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra018429 |
Family | GH28 |
Protein Properties | Length: 532 Molecular Weight: 58661.9 Isoelectric Point: 7.6588 |
Chromosome | Chromosome/Scaffold: 05 Start: 8177308 End: 8179622 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 145 | 486 | 0 |
EAACKVEASMMIIPPEYTFLVGPISFSGPYCQPNIVFQLDGTIIAPTDSKSWGKGLMWWIDFTKLVGIKVQGKGVIDGRGSGWWQQDYPFIDGETKLIVP LNNSVNQNPPISEFDLKMPSIKPTALRFYGSIGVEVSGITIQNSPQCHLKFDNCGDVVVHDMTVSSPGDSPNTDGIHLQNTRDVLIHSTTLSCGDDCISI QTGCSNVYIHTVTCGPGHGISIGSLGKDSTKACVSNITVRDVAMHNTMTGVRIKTWQGGVGSVKGILFSNIQLNEVQLPIVIDQFYCDHTTCKNQTSAVA VEGVTYERIKGTYTVKPVHFACSDDFPCVDVQLSAIELKPVQ |
Full Sequence |
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Protein Sequence Length: 532 Download |
MIMRKSLRLR SITLMMLMAV LVWSVTLETC IARRGRHWRH NNRRSSDMSD SLSSKKPKSH 60 GNSHHSSHNN NNSHHHKSKP KPKPKLQTPP KVDDNYNSPV VSQLPKVQPP SLPSLNESQV 120 FNVMDFGAKG DGIRDDTKAF EAAWEAACKV EASMMIIPPE YTFLVGPISF SGPYCQPNIV 180 FQLDGTIIAP TDSKSWGKGL MWWIDFTKLV GIKVQGKGVI DGRGSGWWQQ DYPFIDGETK 240 LIVPLNNSVN QNPPISEFDL KMPSIKPTAL RFYGSIGVEV SGITIQNSPQ CHLKFDNCGD 300 VVVHDMTVSS PGDSPNTDGI HLQNTRDVLI HSTTLSCGDD CISIQTGCSN VYIHTVTCGP 360 GHGISIGSLG KDSTKACVSN ITVRDVAMHN TMTGVRIKTW QGGVGSVKGI LFSNIQLNEV 420 QLPIVIDQFY CDHTTCKNQT SAVAVEGVTY ERIKGTYTVK PVHFACSDDF PCVDVQLSAI 480 ELKPVQERYH MYDPFCWQTF GELNTPTLPP IDCLQIGKPA RNIVQSDHDV C* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 1.0e-77 | 119 | 482 | 370 | + polygalacturonase | ||
PLN02188 | PLN02188 | 1.0e-79 | 116 | 483 | 372 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 2.0e-81 | 156 | 482 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-88 | 114 | 483 | 375 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 9.0e-108 | 103 | 510 | 414 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF17670.1 | 0 | 1 | 531 | 1 | 542 | AC009398_19 F20B24.8 [Arabidopsis thaliana] |
GenBank | AAL31197.1 | 0 | 76 | 531 | 3 | 473 | At1g60590/F8A5_12 [Arabidopsis thaliana] |
GenBank | ABK95830.1 | 0 | 1 | 531 | 1 | 516 | unknown [Populus trichocarpa] |
RefSeq | NP_563875.6 | 0 | 1 | 531 | 1 | 532 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_564758.2 | 0 | 1 | 531 | 1 | 539 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 1e-19 | 104 | 430 | 15 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 1e-19 | 104 | 430 | 15 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 1e-19 | 104 | 430 | 15 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 1e-19 | 104 | 430 | 15 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 3e-18 | 197 | 430 | 96 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |