y
Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.B01677.1 |
Family | GH28 |
Protein Properties | Length: 506 Molecular Weight: 54796.2 Isoelectric Point: 5.9431 |
Chromosome | Chromosome/Scaffold: 2 Start: 30409229 End: 30413282 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 153 | 412 | 0 |
ASCNVEASTMVVPANHVFLVGPISFVGEHCQENIILQLDGTVVAPTDPQAWGGEHWLHFDKLSRFTLQGSGTVDGRGSVWWRRSQSEDLNVDLLDVDNDA DDGMDSEDADTQAKEEMSSMPRNKPTAMGFDHCLNVTFSGIKIQNSPNFHLTFDHCVGVLVRNMSISSPGDSPDADEIHLGNSQDVTIHDATLACGDDCI SIVSGCSNINIHDVHCGPGHGISIGSLGKDHSRACVHNITVRDVDLQGTTNGVRIKSWQS |
Full Sequence |
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Protein Sequence Length: 506 Download |
MAAFTVAVFV WCVSCCEVCN AREVTNRRSR AATAAADDST TESSLWLWRG RWRIPHFPLP 60 TFPSTAHGLT CPPPRWPYLS RPRPVGPRHD PHRQGPRHGA PKQIPPPTPT VDPTLRPPPP 120 VSVPPVAEPT PPIGAKGDGN TDDTKAFQDA WTASCNVEAS TMVVPANHVF LVGPISFVGE 180 HCQENIILQL DGTVVAPTDP QAWGGEHWLH FDKLSRFTLQ GSGTVDGRGS VWWRRSQSED 240 LNVDLLDVDN DADDGMDSED ADTQAKEEMS SMPRNKPTAM GFDHCLNVTF SGIKIQNSPN 300 FHLTFDHCVG VLVRNMSISS PGDSPDADEI HLGNSQDVTI HDATLACGDD CISIVSGCSN 360 INIHDVHCGP GHGISIGSLG KDHSRACVHN ITVRDVDLQG TTNGVRIKSW QSSAVAVRDV 420 AYEHVSGTYT KRPVDLACSD SMPCEEITLS AIDLRPSSQK PPSHDDGPFC WQTFGRLTTP 480 IAPPIDCVQI GRRSSNRIKS GQDSC* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 4.0e-58 | 133 | 502 | 415 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 4.0e-60 | 134 | 455 | 365 | + polygalacturonase ADPG | ||
PLN03010 | PLN03010 | 2.0e-60 | 134 | 434 | 306 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-61 | 156 | 454 | 338 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 1.0e-83 | 134 | 484 | 395 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAL31197.1 | 0 | 133 | 505 | 62 | 473 | At1g60590/F8A5_12 [Arabidopsis thaliana] |
GenBank | ABK95830.1 | 0 | 133 | 505 | 106 | 516 | unknown [Populus trichocarpa] |
GenBank | ABV24999.1 | 0 | 131 | 505 | 92 | 483 | polygalacturonase 2 [Oncidium Gower Ramsey] |
RefSeq | NP_564758.2 | 0 | 133 | 505 | 128 | 539 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002266600.1 | 0 | 101 | 505 | 67 | 505 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-20 | 126 | 434 | 6 | 308 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_B | 0.000000000002 | 268 | 426 | 95 | 255 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_A | 0.000000000002 | 268 | 426 | 95 | 255 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ia5_A | 0.000000000002 | 268 | 426 | 95 | 255 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 3jur_D | 0.000000000006 | 126 | 357 | 18 | 268 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |