y
Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma01g03400.1 |
Family | GH28 |
Protein Properties | Length: 462 Molecular Weight: 50737.2 Isoelectric Point: 9.2334 |
Chromosome | Chromosome/Scaffold: 01 Start: 2895942 End: 2899203 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 90 | 425 | 0 |
GACKVAGATVKIPAQLKFLIKPVTLQGPCISDLTLQIDGTLLAPPEASTWPKSSLFQWINFKWVRNFTIKGSGTVDGQGYNWWSSSEFYDIQKSYSKHIP GMKPTAIRFYSSNFVTVRDIRIINSPLCHLKFDNSKGIKVNNITISSPENSPNTDGIHLQNTQDVEIQRSIISTGDDCVSIQTGCSNIHVHHINCGPGHG ISLGGLGKDKSAACVSDITVEDISMKNTLYGARIKTWQGGIGMVKNVTFSRIQVYDVMYPIMIDQYYCDKQICKNHTSTVVISGVKFDQIHGTYGMQPVH LACSNSIPCTDVDLTDIQLSPSPKYRGLQQAVCWNS |
Full Sequence |
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Protein Sequence Length: 462 Download |
MKRNRSFSLL FFLSLLVIIF VTFSIVSVEA RKTNIKKKLH KRHKGGHTQG SHSPCPVPTP 60 QGSTFDVLSF GAKGNGVSDD SEAFLAAWNG ACKVAGATVK IPAQLKFLIK PVTLQGPCIS 120 DLTLQIDGTL LAPPEASTWP KSSLFQWINF KWVRNFTIKG SGTVDGQGYN WWSSSEFYDI 180 QKSYSKHIPG MKPTAIRFYS SNFVTVRDIR IINSPLCHLK FDNSKGIKVN NITISSPENS 240 PNTDGIHLQN TQDVEIQRSI ISTGDDCVSI QTGCSNIHVH HINCGPGHGI SLGGLGKDKS 300 AACVSDITVE DISMKNTLYG ARIKTWQGGI GMVKNVTFSR IQVYDVMYPI MIDQYYCDKQ 360 ICKNHTSTVV ISGVKFDQIH GTYGMQPVHL ACSNSIPCTD VDLTDIQLSP SPKYRGLQQA 420 VCWNSYGKSQ GPFLPSSIDY CLRSGGGLIK RIARSHDKVC Y* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 3.0e-70 | 63 | 429 | 377 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 3.0e-71 | 62 | 409 | 355 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 4.0e-72 | 97 | 414 | 319 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-74 | 63 | 435 | 377 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-96 | 65 | 456 | 399 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_189293.1 | 0 | 29 | 460 | 29 | 468 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002266099.1 | 0 | 60 | 460 | 77 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312682.1 | 0 | 29 | 460 | 34 | 466 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002315680.1 | 0 | 65 | 449 | 1 | 378 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527898.1 | 0 | 1 | 460 | 1 | 477 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-24 | 155 | 360 | 110 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 3e-20 | 49 | 443 | 3 | 361 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1nhc_F | 4e-16 | 157 | 409 | 73 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 4e-16 | 157 | 409 | 73 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 4e-16 | 157 | 409 | 73 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |