y
Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 29631.m001013 |
Family | GH28 |
Protein Properties | Length: 510 Molecular Weight: 55143.2 Isoelectric Point: 4.6979 |
Chromosome | Chromosome/Scaffold: 29631 Start: 114749 End: 117520 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 87 | 453 | 0 |
KTACSTPKSVFLVPPGRRYLVNATKFKGPCEEKLVIQIDGTIVAPAEPENWDPNLPRIWLDFSKLNGVLFQGHGVIDGSGSKWWASSCKKNKTNPCRGAP TALTIDSSSSVKVRGLTIQNSQQMNFVIARSASVRVSRVLVSSPGDSPNTDGIHITDSTNVALQDCKIGTGDDCVSIVNGSSGIKMKRIFCGPGHGVSIG SLGKDNSTGIVSKVVLDTAFLKETTNGLRIKTWQVILLPIIDMKSLIVQNTEVCTSRSSNYIHSVTLLQGGNGYVRGIRFENVQMDNVANPIIIDQFYCD SPKTCQNQTSAVKISEIMYRNVTGTTKSARAMNFACSDTVPCENIVLSNINLEKKDGTVETYCNSAQ |
Full Sequence |
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Protein Sequence Length: 510 Download |
MDKLFIVFFL GLLTVVHGVA GNMLYNNIGM LEELESFEVD EENEVELFDT PSWTSERGGK 60 VLVNVDSFGA AGDGVSDDTQ AFVNAWKTAC STPKSVFLVP PGRRYLVNAT KFKGPCEEKL 120 VIQIDGTIVA PAEPENWDPN LPRIWLDFSK LNGVLFQGHG VIDGSGSKWW ASSCKKNKTN 180 PCRGAPTALT IDSSSSVKVR GLTIQNSQQM NFVIARSASV RVSRVLVSSP GDSPNTDGIH 240 ITDSTNVALQ DCKIGTGDDC VSIVNGSSGI KMKRIFCGPG HGVSIGSLGK DNSTGIVSKV 300 VLDTAFLKET TNGLRIKTWQ VILLPIIDMK SLIVQNTEVC TSRSSNYIHS VTLLQGGNGY 360 VRGIRFENVQ MDNVANPIII DQFYCDSPKT CQNQTSAVKI SEIMYRNVTG TTKSARAMNF 420 ACSDTVPCEN IVLSNINLEK KDGTVETYCN SAQGFGIGVV HPSADCLTSQ DKDYSVVGET 480 DIAEEDYVTD QTEIAEVAES SSEAIVHTEL 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 2.0e-76 | 62 | 443 | 383 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 6.0e-79 | 63 | 439 | 381 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-81 | 90 | 439 | 350 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 8.0e-102 | 63 | 462 | 404 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-133 | 51 | 469 | 421 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_173760.2 | 0 | 16 | 505 | 18 | 460 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | XP_002299032.1 | 0 | 1 | 510 | 1 | 469 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002317091.1 | 0 | 30 | 510 | 1 | 447 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328587.1 | 0 | 1 | 479 | 1 | 445 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525360.1 | 0 | 1 | 510 | 1 | 510 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.00000000000001 | 158 | 419 | 115 | 344 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.00000000000009 | 161 | 438 | 79 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.00000000000009 | 161 | 438 | 79 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.00000000000009 | 161 | 438 | 79 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.00000000000009 | 161 | 438 | 79 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |