y
Basic Information | |
---|---|
Species | Brachypodium distachyon |
Cazyme ID | Bradi2g04550.1 |
Family | GH28 |
Protein Properties | Length: 410 Molecular Weight: 43683.5 Isoelectric Point: 6.6842 |
Chromosome | Chromosome/Scaffold: 2 Start: 3168760 End: 3172444 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 65 | 394 | 0 |
WQAACSDGSSPILVIPGGRTFLLSKIRFQGSCKSPITVQLDGNIVAPNYIWTAESDNLLTFYRIDNLTVAGNGQIDGRGAIWWTCYNQKRCTHRPILLAF ASCNNLWVRNIHLKDSPDKHMTLFRCSQVHVDSVSVTAPADSPNTDGINMGNSDHVYISSCSFQTGDDCVSILSGTTDVNVTNTTCGPGHGISVGSLGGA NVIALVERITVSNCSFVGTLTGVRIKSWQGGMGKANGFLFENLKMTAVRIPIDIDQFYCPQGNCPTKDGGVSITDARFVNIHGTSADKQAIQILCSQSVP CRGIYLDDVTLYWDKQNSQAQSKVLNAEGT |
Full Sequence |
---|
Protein Sequence Length: 410 Download |
MGIGVGRTFF VLLLVLAVRS AAAARSSPVA VAGEKAGQQG RYSVLDFHAA GDGKTDDAPA 60 FLEAWQAACS DGSSPILVIP GGRTFLLSKI RFQGSCKSPI TVQLDGNIVA PNYIWTAESD 120 NLLTFYRIDN LTVAGNGQID GRGAIWWTCY NQKRCTHRPI LLAFASCNNL WVRNIHLKDS 180 PDKHMTLFRC SQVHVDSVSV TAPADSPNTD GINMGNSDHV YISSCSFQTG DDCVSILSGT 240 TDVNVTNTTC GPGHGISVGS LGGANVIALV ERITVSNCSF VGTLTGVRIK SWQGGMGKAN 300 GFLFENLKMT AVRIPIDIDQ FYCPQGNCPT KDGGVSITDA RFVNIHGTSA DKQAIQILCS 360 QSVPCRGIYL DDVTLYWDKQ NSQAQSKVLN AEGTIVGDVV PEVQLGIQQ* 420 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 7.0e-87 | 42 | 401 | 368 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 2.0e-88 | 44 | 393 | 357 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 7.0e-89 | 43 | 375 | 344 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 5.0e-89 | 69 | 375 | 309 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 7.0e-95 | 44 | 375 | 340 | + Probable polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD68111.1 | 0 | 10 | 403 | 76 | 454 | putative polygalacturonase [Oryza sativa Japonica Group] |
EMBL | CBI36307.1 | 0 | 7 | 394 | 2 | 391 | unnamed protein product [Vitis vinifera] |
GenBank | EEE53960.1 | 0 | 10 | 293 | 123 | 391 | hypothetical protein OsJ_00563 [Oryza sativa Japonica Group] |
RefSeq | XP_002267182.1 | 0 | 42 | 403 | 26 | 391 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002457261.1 | 0 | 7 | 405 | 22 | 407 | hypothetical protein SORBIDRAFT_03g004360 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 3e-21 | 57 | 361 | 7 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 3e-21 | 57 | 361 | 7 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 3e-21 | 57 | 361 | 7 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 3e-21 | 57 | 361 | 7 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 3e-21 | 57 | 361 | 7 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |