y
Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr1g086390.1 |
Family | GH28 |
Protein Properties | Length: 479 Molecular Weight: 51839.5 Isoelectric Point: 6.4053 |
Chromosome | Chromosome/Scaffold: 1 Start: 23012469 End: 23015152 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 106 | 435 | 0 |
TACQSELDLNVIFVPPGFSFIVQSTIFTGPCKGGLVLKKVDGTIMTPDGPESWLKNNSRRQWLVFYRVNGMSLEGSGTIDGRGQKWWDLPCKPHKGPNGT TLPGPCDSPVAIRFFMSSNLTVQGLRIKNSPQFHFRFDGCQSVHVESIFITAPALSPNTDGIHIENTNDVKIYNSVVSNGDDCVSIGSGCYDVDIKNITC GPGHGISIGSLGNHNSRACVSNITVRDSVIRVSDNGVRIKTWQGGSGSVSGVTFSNIHMDTVKNPIIIDQFYCLSKDCSNKTSAVFVSDIVYTSIKGTYD IRHPPMHFACSDSIPCTNLTLSDIELLPSQ |
Full Sequence |
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Protein Sequence Length: 479 Download |
MKHSPILTLL FSLYFLTSFL SIQARHHFHT KHKHYSHSHN SSSEISLPPA PLPSPTSSAP 60 EEAPSASASP SPSPEVASGL LDVRKFGAIG DGITDDTESF KMAWDTACQS ELDLNVIFVP 120 PGFSFIVQST IFTGPCKGGL VLKKVDGTIM TPDGPESWLK NNSRRQWLVF YRVNGMSLEG 180 SGTIDGRGQK WWDLPCKPHK GPNGTTLPGP CDSPVAIRFF MSSNLTVQGL RIKNSPQFHF 240 RFDGCQSVHV ESIFITAPAL SPNTDGIHIE NTNDVKIYNS VVSNGDDCVS IGSGCYDVDI 300 KNITCGPGHG ISIGSLGNHN SRACVSNITV RDSVIRVSDN GVRIKTWQGG SGSVSGVTFS 360 NIHMDTVKNP IIIDQFYCLS KDCSNKTSAV FVSDIVYTSI KGTYDIRHPP MHFACSDSIP 420 CTNLTLSDIE LLPSQGDMLN DPFCWNAYGN SETLTIPPVF CLLDGIPQSI PANDIDHC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 1.0e-78 | 80 | 458 | 383 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 2.0e-79 | 81 | 462 | 387 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 6.0e-82 | 108 | 431 | 324 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-90 | 81 | 431 | 354 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 6.0e-118 | 80 | 458 | 381 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37004.1 | 0 | 77 | 478 | 85 | 484 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002272733.1 | 0 | 77 | 478 | 66 | 456 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002276945.1 | 0 | 43 | 478 | 42 | 464 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002320271.1 | 0 | 77 | 478 | 39 | 438 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515219.1 | 0 | 78 | 478 | 139 | 537 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 7e-25 | 145 | 431 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 7e-25 | 145 | 431 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 7e-25 | 145 | 431 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 7e-25 | 145 | 431 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 7e-25 | 145 | 431 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |