y
Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 484425 |
Family | GH28 |
Protein Properties | Length: 471 Molecular Weight: 51065.6 Isoelectric Point: 9.6919 |
Chromosome | Chromosome/Scaffold: 5 Start: 2987163 End: 3011426 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 91 | 430 | 0 |
KAACEVVGGKVEIPAGKQFLVKAVTLQGPCKEETVVQIEGTLVAPEKIGSWPKSSLFQWLNIKWVSHVTIQGSGTLNGRGSNWWNLDTYQIQTRNKYIPP MKPTALRFYAAHNVTVRDISIVNSPLCHLKFDDSDGVKVNNITISSPENSPNTDGIHLQNTRNVEIQHSNIACGDDCVSIQTGSSNVHIHHINCGPGHGI SIGGLGKDKSVACVSDIIVEDISIQNTLAGVRIKTWQGGLGVVKNLTFSNIQVTDVKVPIVIDQYYCDKSKCKNQTRAVSISGIKYNNIVGSFTVQPVRI ACSNNVPCMDVDLMDIRLRPSGGIRGLQTHQQQQALCWNS |
Full Sequence |
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Protein Sequence Length: 471 Download |
MKTVKSLPLL AMLLGVIIVA AAISTISVEG RKHHVKKIKP KHRRHSKNTP TGSPAPAPYP 60 STHEGVFNII SFGAKGDGVS DDSKALVRAW KAACEVVGGK VEIPAGKQFL VKAVTLQGPC 120 KEETVVQIEG TLVAPEKIGS WPKSSLFQWL NIKWVSHVTI QGSGTLNGRG SNWWNLDTYQ 180 IQTRNKYIPP MKPTALRFYA AHNVTVRDIS IVNSPLCHLK FDDSDGVKVN NITISSPENS 240 PNTDGIHLQN TRNVEIQHSN IACGDDCVSI QTGSSNVHIH HINCGPGHGI SIGGLGKDKS 300 VACVSDIIVE DISIQNTLAG VRIKTWQGGL GVVKNLTFSN IQVTDVKVPI VIDQYYCDKS 360 KCKNQTRAVS ISGIKYNNIV GSFTVQPVRI ACSNNVPCMD VDLMDIRLRP SGGIRGLQTH 420 QQQQALCWNS YGKTQGPLVP SSIGYCLRKS NIGGYYSQKV SRSYDKICPS * 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 5.0e-74 | 100 | 408 | 310 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03010 | PLN03010 | 3.0e-74 | 67 | 413 | 357 | + polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-74 | 62 | 432 | 377 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 2.0e-79 | 68 | 440 | 378 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-98 | 53 | 460 | 413 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAA66407.1 | 0 | 85 | 412 | 1 | 328 | polygalacturonase precursor homologue [Arabidopsis thaliana] |
RefSeq | NP_189293.1 | 0 | 29 | 470 | 29 | 470 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002266099.1 | 0 | 29 | 468 | 29 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312682.1 | 0 | 31 | 469 | 31 | 467 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527898.1 | 0 | 1 | 468 | 1 | 477 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-29 | 81 | 359 | 37 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 2e-23 | 68 | 449 | 22 | 362 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1nhc_F | 3e-19 | 95 | 400 | 20 | 310 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-19 | 95 | 400 | 20 | 310 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-19 | 95 | 400 | 20 | 310 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |