y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.015G088600.1 |
Family | GH28 |
Protein Properties | Length: 359 Molecular Weight: 39136.7 Isoelectric Point: 4.5965 |
Chromosome | Chromosome/Scaffold: 15 Start: 11108070 End: 11110657 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 61 | 278 | 0 |
SSCSVPIIQVPSGKSFLLQPLTFNGECKPDQIIFQIDGTMKAPSDPSDWKCQEHRYCKQWITFDEVDNLTIRGSGTMDGQGSTWWELISHSQNVHLEGLT FKDSPQMHMAFERSEWVYASNLTIQAPGDSPNTDGIHLQHAKNIFIDYSRIMTGDDCISIGDGSSQINITRIACGPGHGISIGSLGIDGESETVEDVHVS DVVFTETTNGARIKTWQS |
Full Sequence |
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Protein Sequence Length: 359 Download |
MAKYFLLLLV LILGEATSTQ SRSLRSCNQV YNVIDYGAVG DGDTDDTQAF KDAWKDVCKS 60 SSCSVPIIQV PSGKSFLLQP LTFNGECKPD QIIFQIDGTM KAPSDPSDWK CQEHRYCKQW 120 ITFDEVDNLT IRGSGTMDGQ GSTWWELISH SQNVHLEGLT FKDSPQMHMA FERSEWVYAS 180 NLTIQAPGDS PNTDGIHLQH AKNIFIDYSR IMTGDDCISI GDGSSQINIT RIACGPGHGI 240 SIGSLGIDGE SETVEDVHVS DVVFTETTNG ARIKTWQSSA VEISKIRFEN IYGTSHRKPA 300 VHIACSKSVP CTDIVLSNVH LEAADDGDGD DGDEPSTYCA NVQGHAMGRV FPPLTCLS* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-72 | 18 | 352 | 393 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 7.0e-76 | 2 | 353 | 415 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 7.0e-80 | 32 | 358 | 377 | + Probable polygalacturonase At3g15720 | ||
PLN02793 | PLN02793 | 1.0e-85 | 20 | 358 | 397 | + Probable polygalacturonase | ||
PLN03010 | PLN03010 | 1.0e-85 | 29 | 346 | 359 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB10216.1 | 0 | 6 | 357 | 10 | 406 | polygalacturonase-like protein [Arabidopsis thaliana] |
EMBL | CBI15273.1 | 0 | 30 | 357 | 25 | 388 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_198807.1 | 0 | 6 | 357 | 10 | 368 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002267133.1 | 0 | 29 | 357 | 24 | 390 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002321662.1 | 0 | 6 | 357 | 1 | 352 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-24 | 112 | 301 | 94 | 309 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 1e-16 | 68 | 326 | 26 | 295 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-16 | 68 | 326 | 26 | 295 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-16 | 68 | 326 | 26 | 295 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-16 | 68 | 326 | 26 | 295 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |