y
Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.010G018000.1 |
Family | GH28 |
Protein Properties | Length: 390 Molecular Weight: 40812.4 Isoelectric Point: 8.0957 |
Chromosome | Chromosome/Scaffold: 10 Start: 2807023 End: 2810659 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 51 | 376 | 0 |
AWQKTCSTKGASTLVIPSKGVFLLKKNIILKGPCQATNIKIQLQGRIAVATQNAWLGDKSTIILITNVNGLTIDGTGGSIDGFGSTWWACKNCPRPSVLS FNACNGLSVSYLSIMNSPEAHITINGCVGATFSHITIQSSANSPNTDGIDISSSKNILIKDSNIAAGDDCIAIIGESSYINATGVACGPGHGISIGSLGR NDGHDKVEHVYVYDCSFNKTTNGARIKTFQGGLGYARSITYEKITLTQVSNPIIINQNYVSLKSGGGVEVSGVTFRGFTGTSADDKAITLACSSQGCFNI VLDQVTIKSSVPGKPASCSCTNAHGT |
Full Sequence |
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Protein Sequence Length: 390 Download |
MQRLISWVLI LCFVSPCFCE RLMGSANTYN VIDYGAHGDG KTDDSQAFLS AWQKTCSTKG 60 ASTLVIPSKG VFLLKKNIIL KGPCQATNIK IQLQGRIAVA TQNAWLGDKS TIILITNVNG 120 LTIDGTGGSI DGFGSTWWAC KNCPRPSVLS FNACNGLSVS YLSIMNSPEA HITINGCVGA 180 TFSHITIQSS ANSPNTDGID ISSSKNILIK DSNIAAGDDC IAIIGESSYI NATGVACGPG 240 HGISIGSLGR NDGHDKVEHV YVYDCSFNKT TNGARIKTFQ GGLGYARSIT YEKITLTQVS 300 NPIIINQNYV SLKSGGGVEV SGVTFRGFTG TSADDKAITL ACSSQGCFNI VLDQVTIKSS 360 VPGKPASCSC TNAHGTATST VPNCASLMK* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 6.0e-65 | 56 | 379 | 336 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 1.0e-70 | 31 | 386 | 374 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 9.0e-73 | 18 | 384 | 382 | + polygalacturonase ADPG | ||
PLN03010 | PLN03010 | 6.0e-87 | 29 | 380 | 361 | + polygalacturonase | ||
PLN03003 | PLN03003 | 4.0e-87 | 18 | 387 | 380 | + Probable polygalacturonase At3g15720 |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 1 | 387 | 1 | 396 | PGN [Glycine max] |
GenBank | ABC75354.1 | 0 | 1 | 387 | 1 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
EMBL | CBI36307.1 | 0 | 1 | 387 | 1 | 402 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002324855.1 | 0 | 1 | 382 | 1 | 389 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 1 | 387 | 1 | 392 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-24 | 122 | 329 | 118 | 334 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 2e-22 | 117 | 372 | 71 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 2e-22 | 117 | 372 | 71 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 2e-22 | 117 | 372 | 71 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 2e-22 | 117 | 372 | 71 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |