y
Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 483267 |
Family | GH28 |
Protein Properties | Length: 434 Molecular Weight: 46481.5 Isoelectric Point: 9.1555 |
Chromosome | Chromosome/Scaffold: 4 Start: 20472159 End: 20474599 |
Description | polygalacturonase abscission zone A. thaliana |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 91 | 416 | 0 |
WKKACSSNGAVNLLVPKGNTYFLKSIQLTGPCSSIITVQMFGTLSASQKRTDYKDISKWIMFDGVNSLSVDGGGTGVVDGNGETWWQNSCKRNKAKPCTK APTALTFYNSKSLIVENLRVRNAQQIQISIEKSSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSDSIIGTGDDCISIESGSQNVQINDITCGPGHGIS IGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMENVKNPIIIDQDYCDKSKCTSQQSAVQVKNVVYRNISGTSASDKAITF NCSKNYPCLGIVLDKVNIKGGKATCT |
Full Sequence |
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Protein Sequence Length: 434 Download |
MARCSKLVTV FLLWALLMFS WCKGSRISPN GYDHSYKRFK SDSLINRKQD ITGLRSFVRA 60 SLRTPTTVSV SDYGAKGDGK TDDTQAFVNA WKKACSSNGA VNLLVPKGNT YFLKSIQLTG 120 PCSSIITVQM FGTLSASQKR TDYKDISKWI MFDGVNSLSV DGGGTGVVDG NGETWWQNSC 180 KRNKAKPCTK APTALTFYNS KSLIVENLRV RNAQQIQISI EKSSNVQVSN VVVTAPADSP 240 NTDGIHITNT QNIRVSDSII GTGDDCISIE SGSQNVQIND ITCGPGHGIS IGSLGDDNSK 300 AFVSGVTVDG AKLSGTDNGV RIKTYQGGSG TASNIIFQNI QMENVKNPII IDQDYCDKSK 360 CTSQQSAVQV KNVVYRNISG TSASDKAITF NCSKNYPCLG IVLDKVNIKG GKATCTNANV 420 VDKGAVFPQC NST* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 1.0e-75 | 57 | 409 | 358 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 4.0e-95 | 66 | 428 | 372 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 1.0e-104 | 95 | 420 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 4.0e-121 | 59 | 428 | 378 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 0 | 1 | 431 | 431 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC02763.1 | 0 | 1 | 433 | 1 | 426 | putative polygalacturonase [Arabidopsis thaliana] |
GenBank | AAL84942.1 | 0 | 1 | 433 | 1 | 433 | At2g41850/T11A7.5 [Arabidopsis thaliana] |
EMBL | CAC05657.1 | 0 | 1 | 433 | 1 | 434 | endopolygalacturonase [Brassica napus] |
RefSeq | NP_191310.1 | 0 | 1 | 430 | 1 | 430 | ADPG1; polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_850359.1 | 0 | 1 | 433 | 1 | 433 | PGAZAT (POLYGALACTURONASE ABSCISSION ZONE A. THALIANA); polygalacturonase [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 5e-23 | 92 | 420 | 15 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 5e-23 | 92 | 420 | 15 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 5e-23 | 92 | 420 | 15 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 5e-23 | 92 | 420 | 15 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 5e-23 | 92 | 420 | 15 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |