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Basic Information | |
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Species | Thellungiella halophila |
Cazyme ID | Thhalv10011452m |
Family | GH28 |
Protein Properties | Length: 476 Molecular Weight: 51230.8 Isoelectric Point: 4.5671 |
Chromosome | Chromosome/Scaffold: 7 Start: 6407380 End: 6410283 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 104 | 431 | 0 |
KAACAVESGVVLAPEGGVFKITSTIFSGPCKPGLVFQLDGVLMPPDGPEEWPEKDSKTQWLVFYRLDGVTFAGKGTVEGNGQKWWDLPCKPHRGPEGSTS FGPCVSPTMIRFFMSNNIEVKGLRIQNSPQFHMKFDGCEGVLINDIQISSPKLSPNTDGIHLGNTRSVGIYNSLVSNGDDCISIGTGCSDIDIQGVTCGP SHGISIGSLGVHNSQACVSNITVRNTAIRDSDNGLRIKTWQGGTGSVSNLLFENIQMENVLNCIIVDQYYCQSKDCRNETSAVRVFDIEYRNIKGTYDVR SPPIHFACSDTVACTNITMSEVELLPEE |
Full Sequence |
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Protein Sequence Length: 476 Download |
MRIVSGILVI YIISSILFGH LICVARGRYH YHKRRGLSNP PPPPPPVLTA DPPQVPSDPY 60 PSPNPNPDPA PGDSNTGCVF DVTSFGAVGD GSCDDTAAFR AAWKAACAVE SGVVLAPEGG 120 VFKITSTIFS GPCKPGLVFQ LDGVLMPPDG PEEWPEKDSK TQWLVFYRLD GVTFAGKGTV 180 EGNGQKWWDL PCKPHRGPEG STSFGPCVSP TMIRFFMSNN IEVKGLRIQN SPQFHMKFDG 240 CEGVLINDIQ ISSPKLSPNT DGIHLGNTRS VGIYNSLVSN GDDCISIGTG CSDIDIQGVT 300 CGPSHGISIG SLGVHNSQAC VSNITVRNTA IRDSDNGLRI KTWQGGTGSV SNLLFENIQM 360 ENVLNCIIVD QYYCQSKDCR NETSAVRVFD IEYRNIKGTY DVRSPPIHFA CSDTVACTNI 420 TMSEVELLPE EGELVDDPFC WNAYGTQETL TIPPIDCLLD GSPVVEEAYD SNLGC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 7.0e-66 | 80 | 422 | 347 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 7.0e-66 | 80 | 458 | 388 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 1.0e-81 | 82 | 422 | 345 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 6.0e-87 | 113 | 423 | 312 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 1.0e-94 | 79 | 473 | 398 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF79535.1 | 0 | 1 | 475 | 1 | 492 | AC023673_23 F21D18.18 [Arabidopsis thaliana] |
GenBank | AAK95305.1 | 0 | 1 | 475 | 1 | 475 | AF410319_1 At1g48100/F21D18_17 [Arabidopsis thaliana] |
RefSeq | NP_175244.1 | 0 | 1 | 475 | 1 | 475 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002263668.1 | 0 | 71 | 475 | 73 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002519290.1 | 0 | 1 | 475 | 1 | 479 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 3e-25 | 142 | 427 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-25 | 142 | 427 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-25 | 142 | 427 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 3e-25 | 142 | 427 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 3e-25 | 142 | 427 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |