y
Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 29864.m001500 |
Family | GH28 |
Protein Properties | Length: 446 Molecular Weight: 48633.4 Isoelectric Point: 8.8017 |
Chromosome | Chromosome/Scaffold: 29864 Start: 1089679 End: 1093310 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 103 | 436 | 0 |
EEACSSEESAIIVVPKNKIYYLKPVKFSGPCQSDLIFKIYGTIKASVKMRDYEKDRRHWIVFDNVENLRVKGGGTINGNGKMWWDNSCKIDKSKPCIGAP TAVTFSDCKNLIVANLWFQNAQQMHLTFQKCKNVRALNLIVTAPGKSPNTDGIHVTSTQNIRIRNCVIRTGDDCLSIESGSKNVEATDIVCGPGHGISIG SLGDGNSEAEVSNVLVNRATLSGTTNGVRIKTWQGGSGFAKNIVFQNIVMNNVTNPIIIDQNYCDQDDPCPEQKSAVQVSNVVYKSIKGTSASETAMKFD CSKTFPCQGILLQDVALGNQRVDNAKASCANVNL |
Full Sequence |
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Protein Sequence Length: 446 Download |
MYPKNPPRLL LLFFFLLTFF VSCFGSFQES PVSHVVKDGT VNGFTAIHGK INNALKLSFS 60 SFSKLARQQA SSPTSSTKIV NVEDFGAKAD GTDASEAFKK AWEEACSSEE SAIIVVPKNK 120 IYYLKPVKFS GPCQSDLIFK IYGTIKASVK MRDYEKDRRH WIVFDNVENL RVKGGGTING 180 NGKMWWDNSC KIDKSKPCIG APTAVTFSDC KNLIVANLWF QNAQQMHLTF QKCKNVRALN 240 LIVTAPGKSP NTDGIHVTST QNIRIRNCVI RTGDDCLSIE SGSKNVEATD IVCGPGHGIS 300 IGSLGDGNSE AEVSNVLVNR ATLSGTTNGV RIKTWQGGSG FAKNIVFQNI VMNNVTNPII 360 IDQNYCDQDD PCPEQKSAVQ VSNVVYKSIK GTSASETAMK FDCSKTFPCQ GILLQDVALG 420 NQRVDNAKAS CANVNLSSRG KVYPQC 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 6.0e-87 | 75 | 434 | 369 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 2.0e-91 | 75 | 444 | 378 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 3.0e-116 | 114 | 434 | 321 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 7.0e-140 | 67 | 444 | 380 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 3.0e-147 | 69 | 446 | 381 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC26512.1 | 0 | 9 | 446 | 16 | 458 | polygalacturonase precursor [Cucumis melo] |
GenBank | AAF21207.1 | 0 | 1 | 446 | 1 | 437 | AC013483_31 putative polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_187454.2 | 0 | 1 | 446 | 1 | 438 | QRT2 (QUARTET 2); polygalacturonase [Arabidopsis thaliana] |
RefSeq | XP_002313308.1 | 0 | 72 | 446 | 1 | 375 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517823.1 | 0 | 1 | 446 | 1 | 446 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-23 | 88 | 365 | 19 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 3e-18 | 175 | 392 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-18 | 175 | 392 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-18 | 175 | 392 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 3e-18 | 175 | 392 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |