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Basic Information | |
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Species | Arabidopsis thaliana |
Cazyme ID | AT3G15720.1 |
Family | GH28 |
Protein Properties | Length: 457 Molecular Weight: 49299.8 Isoelectric Point: 5.2493 |
Chromosome | Chromosome/Scaffold: 3 Start: 5325290 End: 5327537 |
Description | polygalacturonase, putative, expressed |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 47 | 377 | 0 |
WEAVCSGTGDGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQMLGKLVAPSKGNWKGDKDQWILFTDIEGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSC NNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGET ATVENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNFIGTSKSEYGVDFRCSERVP CTEIFLRDMKIETASSGSGQVAQGQCLNVRG |
Full Sequence |
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Protein Sequence Length: 457 Download |
MKKKTWFLNF SLFFLQIFTS SNALDVTQFG AVGDGVTDDS QAFLKAWEAV CSGTGDGQFV 60 VPAGMTFMLQ PLKFQGSCKS TPVFVQMLGK LVAPSKGNWK GDKDQWILFT DIEGLVIEGD 120 GEINGQGSSW WEHKGSRPTA LKFRSCNNLR LSGLTHLDSP MAHIHISECN YVTISSLRIN 180 APESSPNTDG IDVGASSNVV IQDCIIATGD DCIAINSGTS NIHISGIDCG PGHGISIGSL 240 GKDGETATVE NVCVQNCNFR GTMNGARIKT WQGGSGYARM ITFNGITLDN VENPIIIDQF 300 YNGGDSDNAK DRKSSAVEVS KVVFSNFIGT SKSEYGVDFR CSERVPCTEI FLRDMKIETA 360 SSGSGQVAQG QCLNVRGAST IAVPGLECLE LSTDMFSSAQ LLEQTCMSAQ SVQPRTTTQP 420 MQDPIWVFQS RGKQLRVYNI AILVSFISLV TYILAR* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 1.0e-89 | 51 | 375 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 7.0e-93 | 20 | 358 | 350 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-101 | 20 | 393 | 385 | + Probable polygalacturonase | ||
PLN03010 | PLN03010 | 3.0e-122 | 7 | 380 | 378 | + polygalacturonase | ||
PLN03003 | PLN03003 | 0 | 1 | 456 | 456 | + Probable polygalacturonase At3g15720 |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
GO:0009505 | plant-type cell wall |
GO:0010583 | response to cyclopentenone |
GO:0031225 | anchored to membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABC75354.1 | 0 | 22 | 389 | 21 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
RefSeq | NP_001078162.1 | 0 | 3 | 456 | 2 | 452 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_566524.1 | 0 | 1 | 456 | 1 | 456 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002266543.1 | 0 | 25 | 390 | 21 | 375 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324855.1 | 0 | 10 | 392 | 6 | 397 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 4e-26 | 39 | 304 | 7 | 269 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 4e-26 | 39 | 304 | 7 | 269 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 4e-26 | 39 | 304 | 7 | 269 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 4e-26 | 39 | 304 | 7 | 269 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 4e-26 | 39 | 304 | 7 | 269 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |