y
Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si021758m |
Family | GH28 |
Protein Properties | Length: 524 Molecular Weight: 56223.7 Isoelectric Point: 8.0141 |
Chromosome | Chromosome/Scaffold: 3 Start: 11798454 End: 11801114 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 150 | 487 | 0 |
AAACAAGDSVILNVPAGKAFQIWPLTLAGPCGSEIKLLISGNIVAPESPSDWGPGDRTQWLHFHQVQNLKVTGGGIIDGRGRQWWARSSCQEKKNCTAQP APKAVHFEDCQGISVLGITLQNSQQHHLTFTRCSHVKANYLRVTSPENSINTNGIHLVDSRNVHVMDSLISTGDDCVSIVGSCTDVRLRAISCGPGHGIS IGFLGVNNSVDYVEKIKVDTLFISNAQNGVRIRTTKIGGGGFARKVKFGSIIMKNVTNPIIVDQGNFSDLADSSEARAAATGVQVEKINYIDIRGTSASE HAVTFSCSDAMPCRRLSLTNVNLTRVDGRNASSYCHKA |
Full Sequence |
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Protein Sequence Length: 524 Download |
MDRERWCTYP GYPTHNVGLW AIWKTGTTVP AHVFGVPRPA LRTHAAPCPR TSAPLRPRCS 60 ARFDFNCSST LLAVVRPAAS EWRADTLLLA RPFRSVMARA AAAVPLLLAA VVAVLLPDAA 120 DSRTLLTLDD FGAVGDGVAN DTKAFADAWA AACAAGDSVI LNVPAGKAFQ IWPLTLAGPC 180 GSEIKLLISG NIVAPESPSD WGPGDRTQWL HFHQVQNLKV TGGGIIDGRG RQWWARSSCQ 240 EKKNCTAQPA PKAVHFEDCQ GISVLGITLQ NSQQHHLTFT RCSHVKANYL RVTSPENSIN 300 TNGIHLVDSR NVHVMDSLIS TGDDCVSIVG SCTDVRLRAI SCGPGHGISI GFLGVNNSVD 360 YVEKIKVDTL FISNAQNGVR IRTTKIGGGG FARKVKFGSI IMKNVTNPII VDQGNFSDLA 420 DSSEARAAAT GVQVEKINYI DIRGTSASEH AVTFSCSDAM PCRRLSLTNV NLTRVDGRNA 480 SSYCHKAFGR SIGTVIPESC LSKEDYVQHV PRHSEEDEAD SDS* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 7.0e-66 | 122 | 500 | 381 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 3.0e-66 | 126 | 502 | 382 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 7.0e-73 | 161 | 484 | 324 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-79 | 124 | 498 | 377 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 6.0e-114 | 122 | 502 | 382 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY98883.1 | 0 | 118 | 508 | 22 | 415 | hypothetical protein OsI_20839 [Oryza sativa Indica Group] |
GenBank | EEE64554.1 | 0 | 118 | 508 | 28 | 421 | hypothetical protein OsJ_19406 [Oryza sativa Japonica Group] |
RefSeq | NP_001056199.1 | 0 | 118 | 508 | 28 | 421 | Os05g0542900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001151374.1 | 0 | 121 | 523 | 24 | 429 | polygalacturonase [Zea mays] |
RefSeq | XP_002440168.1 | 0 | 121 | 523 | 24 | 423 | hypothetical protein SORBIDRAFT_09g027160 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-20 | 153 | 473 | 36 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.0000000000001 | 216 | 486 | 68 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.0000000000001 | 216 | 486 | 68 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.0000000000001 | 216 | 486 | 68 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.0000000000001 | 216 | 486 | 68 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |