y
Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si035806m |
Family | GH28 |
Protein Properties | Length: 430 Molecular Weight: 45721.1 Isoelectric Point: 8.7868 |
Chromosome | Chromosome/Scaffold: 9 Start: 2493293 End: 2494798 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 78 | 413 | 0 |
WEAACASPRPAVVLVPGGKRYLLKVVRLSGPCKSGVTLAVKGTLVASPNRADWSDKDRRHWIVFRGVDELTVNGGGAVDGNGETWWKHSCKINKAMPCKE APTALSFHFCTNLKVEGLKVMNSQQIHMSIEDCTNVQLRGLSITASGTSPNTDGIHITRSKDVQVTNCKIRTGDDCMSIENGTHNLHVSKVVCGPGHGIS IGSLGDDNSRAEVSGITIDAVQLYGTTNGARIKTYQGGSGYAKDITFQNMIMDNVKNPIIIDQNYCDKAKPCKAQESAVEVSNVVFKNIRGTTITKDAIK LNCSRNVPCHGITLQNIDLKMEAGDGAAESTCQNAK |
Full Sequence |
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Protein Sequence Length: 430 Download |
MAPRKVHLVF SAPLLALLFL SSALMAGLAA ATSNGTSADD ARGRSLASPS QGGVFSLDRY 60 GARGDGRHDD AEALAKAWEA ACASPRPAVV LVPGGKRYLL KVVRLSGPCK SGVTLAVKGT 120 LVASPNRADW SDKDRRHWIV FRGVDELTVN GGGAVDGNGE TWWKHSCKIN KAMPCKEAPT 180 ALSFHFCTNL KVEGLKVMNS QQIHMSIEDC TNVQLRGLSI TASGTSPNTD GIHITRSKDV 240 QVTNCKIRTG DDCMSIENGT HNLHVSKVVC GPGHGISIGS LGDDNSRAEV SGITIDAVQL 300 YGTTNGARIK TYQGGSGYAK DITFQNMIMD NVKNPIIIDQ NYCDKAKPCK AQESAVEVSN 360 VVFKNIRGTT ITKDAIKLNC SRNVPCHGIT LQNIDLKMEA GDGAAESTCQ NAKWRKVGTV 420 LPQPCTSKN* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 2.0e-89 | 52 | 429 | 380 | + polygalacturonase | ||
PLN02188 | PLN02188 | 9.0e-99 | 34 | 426 | 396 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 4.0e-111 | 84 | 413 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-133 | 47 | 429 | 383 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-141 | 45 | 423 | 381 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_001140231.1 | 0 | 19 | 428 | 27 | 441 | hypothetical protein LOC100272271 [Zea mays] |
RefSeq | NP_001142092.1 | 0 | 42 | 427 | 80 | 478 | hypothetical protein LOC100274254 [Zea mays] |
RefSeq | XP_002463688.1 | 0 | 54 | 425 | 61 | 432 | hypothetical protein SORBIDRAFT_01g004230 [Sorghum bicolor] |
RefSeq | XP_002466241.1 | 0 | 21 | 428 | 15 | 434 | hypothetical protein SORBIDRAFT_01g004190 [Sorghum bicolor] |
RefSeq | XP_002466242.1 | 0 | 54 | 429 | 74 | 452 | hypothetical protein SORBIDRAFT_01g004220 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 9e-22 | 149 | 400 | 113 | 365 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 4e-20 | 90 | 411 | 26 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 4e-20 | 90 | 411 | 26 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 4e-20 | 90 | 411 | 26 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 4e-20 | 90 | 411 | 26 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |