y
Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si016953m |
Family | GH28 |
Protein Properties | Length: 508 Molecular Weight: 53505.7 Isoelectric Point: 4.7877 |
Chromosome | Chromosome/Scaffold: 1 Start: 8647742 End: 8651142 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 120 | 449 | 0 |
TACSLENAVFLVPAGRRYKVGASTFMGPCKPKMIIQIQGTIVAPEEPSEWDPRSPRLWLLFSGLAGARIQGGGVIDGSGSKWWANSCKINKSNPCKAAPT AVTIDSCRGVRVKGLRVQNAQQMHLTVYRSRSVRVTGVRIDAPEDSPNTDGIHVAESTAVTIQNCRIGTGDDCISIVNASFNIRMKNIDCGPGHGISIGS LGKGGTFAAVENVALDTARISRAQNGVRIKTWQGGAGYVRGVRFSNVVVDDVDHPIVIDQFYCDAAGGAPCRSSTASAVAVSGVAYRNISGTSRRADAIR FACSDAVPCTGIVLSDIDLRRSDDDGGGEV |
Full Sequence |
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Protein Sequence Length: 508 Download |
MGAGRRGGTR ATTLLLVLQV LFVAVARAAV GGGGGEDAGE SFLRLWSDGG EEADGQQEDV 60 FKWDGEEDDD DDEEEGRIMM WGKGTGRPPT CRNVVNVDSF GAAGDGDADD TEAFSNAWKT 120 ACSLENAVFL VPAGRRYKVG ASTFMGPCKP KMIIQIQGTI VAPEEPSEWD PRSPRLWLLF 180 SGLAGARIQG GGVIDGSGSK WWANSCKINK SNPCKAAPTA VTIDSCRGVR VKGLRVQNAQ 240 QMHLTVYRSR SVRVTGVRID APEDSPNTDG IHVAESTAVT IQNCRIGTGD DCISIVNASF 300 NIRMKNIDCG PGHGISIGSL GKGGTFAAVE NVALDTARIS RAQNGVRIKT WQGGAGYVRG 360 VRFSNVVVDD VDHPIVIDQF YCDAAGGAPC RSSTASAVAV SGVAYRNISG TSRRADAIRF 420 ACSDAVPCTG IVLSDIDLRR SDDDGGGEVQ TVCNCAVGFD YGCVRPAVDC LRSSTCGGAP 480 DDHPDHDDDK EKEAAETTPA PILHTEL* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 6.0e-66 | 96 | 432 | 341 | + polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-72 | 90 | 431 | 344 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 6.0e-87 | 127 | 432 | 306 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-94 | 83 | 432 | 353 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-114 | 89 | 431 | 344 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD07736.1 | 0 | 40 | 478 | 24 | 459 | putative polygalacturonase [Oryza sativa Japonica Group] |
GenBank | EEC72414.1 | 0 | 40 | 478 | 24 | 459 | hypothetical protein OsI_05716 [Oryza sativa Indica Group] |
RefSeq | NP_001045783.1 | 0 | 4 | 478 | 6 | 486 | Os02g0130200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002317091.1 | 0 | 66 | 507 | 9 | 447 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002453250.1 | 0 | 40 | 507 | 45 | 520 | hypothetical protein SORBIDRAFT_04g002530 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 8e-22 | 191 | 438 | 77 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 8e-22 | 191 | 438 | 77 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 8e-22 | 191 | 438 | 77 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 8e-22 | 191 | 438 | 77 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 8e-22 | 191 | 438 | 77 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |