y
Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000127265 |
Family | GH28 |
Protein Properties | Length: 341 Molecular Weight: 37351.8 Isoelectric Point: 6.2205 |
Chromosome | Chromosome/Scaffold: 012777349 Start: 7875 End: 9525 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 12 | 296 | 0 |
NTKRQDWLLFKEVHRMLMQGNGLLNGRGEKWWDLPCKPHKNYMPADDINFVSMLEQGGKGSCDSPSIIRFSKGSDLFVRGLRLENSPKIHIRFDSCEHVS VESISIISPEDSPNTDGIHIEDTTNAEIHHSTISTGDDCVSIGTGCYNVDISYMTCGPSHGISIGSLGEGNSQACVTNITVSDSIIKNSDNGVRIKTWQG GSGMVSKVTFKDIHMDTVLNPIIINQFYCLKKQCSNQTSAVLIDSVXFSNIMGTYDSRKPPIHLACSDSLPCKNLTLSGIHLLPA |
Full Sequence |
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Protein Sequence Length: 341 Download |
MPPDGPDQWP PNTKRQDWLL FKEVHRMLMQ GNGLLNGRGE KWWDLPCKPH KNYMPADDIN 60 FVSMLEQGGK GSCDSPSIIR FSKGSDLFVR GLRLENSPKI HIRFDSCEHV SVESISIISP 120 EDSPNTDGIH IEDTTNAEIH HSTISTGDDC VSIGTGCYNV DISYMTCGPS HGISIGSLGE 180 GNSQACVTNI TVSDSIIKNS DNGVRIKTWQ GGSGMVSKVT FKDIHMDTVL NPIIINQFYC 240 LKKQCSNQTS AVLIDSVXFS NIMGTYDSRK PPIHLACSDS LPCKNLTLSG IHLLPAXGGT 300 HLDPFCSQAF GTKDAFSTPR VPCLMTGYPK GLENEVDRSC F 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 3.0e-50 | 15 | 300 | 289 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 2.0e-50 | 15 | 323 | 312 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 7.0e-64 | 12 | 293 | 290 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 3.0e-69 | 3 | 293 | 291 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-81 | 3 | 324 | 324 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37004.1 | 0 | 2 | 337 | 157 | 482 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002276945.1 | 0 | 1 | 338 | 136 | 463 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002320271.1 | 0 | 1 | 337 | 110 | 436 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330008.1 | 0 | 1 | 330 | 89 | 407 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002512560.1 | 0 | 1 | 340 | 142 | 470 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 5e-24 | 27 | 293 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 5e-24 | 27 | 293 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 5e-24 | 27 | 293 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 5e-24 | 27 | 293 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 5e-24 | 27 | 293 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CX663441 | 292 | 45 | 336 | 0 |
DR450143 | 280 | 3 | 282 | 0 |
DW479564 | 278 | 1 | 273 | 0 |
GR169315 | 277 | 16 | 288 | 0 |
EY254539 | 310 | 9 | 309 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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