y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10042371 |
Family | GH28 |
Protein Properties | Length: 471 Molecular Weight: 50996.1 Isoelectric Point: 6.2837 |
Chromosome | Chromosome/Scaffold: 123 Start: 1877264 End: 1880478 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 131 | 459 | 0 |
SSGKGAVHLVVPAKKSYTLRPIRFSGPCKSKLTVEISGTIQASNDRLDYEEDRSHWLVFDGVQNLAVQGDGTIDGQGKVWWQNSCKPCKKAPTAVIFYKC NNLVVKNLRIQNAQQMHLSFQSCNNVQASNLHVTSPQDSPNTDGIHVTATQNIRISNAVIGTGDDCISIVSGSKNVEADSITCGPGHGISIGSLGSHSSE AYVSGVSVNGAKFSGTSNGLRIKTWQGGSGRAANIKFQNVEMDNVENPIIIDQSYCDQDKPCKQQKSAVQVKDVVYKNIKGTSASEVAIKFDCSKSFPCE GVVLQDVHLERGGSDDVKKATAVCDNVKL |
Full Sequence |
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Protein Sequence Length: 471 Download |
MVMSSRPSQW ATIFIIFFIV ISITLSCHHC FADHVYSNDY PTIEQAIRDR TDDQQLVDDG 60 RPPYPSYFGV VDDAQSMDPV KLATDILSFK AAETSSSSSS STRRLQVEDF REDGDDDTKT 120 LEKAWDAACK SSGKGAVHLV VPAKKSYTLR PIRFSGPCKS KLTVEISGTI QASNDRLDYE 180 EDRSHWLVFD GVQNLAVQGD GTIDGQGKVW WQNSCKPCKK APTAVIFYKC NNLVVKNLRI 240 QNAQQMHLSF QSCNNVQASN LHVTSPQDSP NTDGIHVTAT QNIRISNAVI GTGDDCISIV 300 SGSKNVEADS ITCGPGHGIS IGSLGSHSSE AYVSGVSVNG AKFSGTSNGL RIKTWQGGSG 360 RAANIKFQNV EMDNVENPII IDQSYCDQDK PCKQQKSAVQ VKDVVYKNIK GTSASEVAIK 420 FDCSKSFPCE GVVLQDVHLE RGGSDDVKKA TAVCDNVKLT EVGAVSPSCQ * 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 6.0e-84 | 105 | 465 | 367 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 9.0e-95 | 111 | 467 | 364 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 2.0e-112 | 132 | 469 | 341 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-125 | 103 | 468 | 375 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 4.0e-143 | 105 | 469 | 375 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACJ06506.1 | 0 | 100 | 469 | 69 | 440 | polygalacturonase [Diospyros kaki] |
Swiss-Prot | P35336 | 0 | 64 | 470 | 48 | 456 | PGLR_ACTDE RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
RefSeq | XP_002308956.1 | 0 | 64 | 469 | 34 | 442 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002322711.1 | 0 | 64 | 469 | 46 | 452 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529616.1 | 0 | 64 | 469 | 65 | 473 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-26 | 110 | 439 | 18 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 6e-20 | 179 | 457 | 55 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 6e-20 | 179 | 457 | 55 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 6e-20 | 179 | 457 | 55 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 6e-20 | 179 | 457 | 55 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |