y
Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_69.85 |
Family | GH28 |
Protein Properties | Length: 458 Molecular Weight: 50065.2 Isoelectric Point: 8.446 |
Chromosome | Chromosome/Scaffold: 69 Start: 980997 End: 983407 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 96 | 419 | 0 |
RAACKVTGASVVIPSKFKFLIKPITLQGPCMPHLVLQIDGTVLASSKVSSWPKSSLFQWINFKWIHNFTIQGAGIVDGQGSDWWTLSHAYDLQALRFYDS HNVTVREITIINSPQCHLKFDSSNAIRVNNITISSPESSPNTDGIHLQNTRDVEIQNSNIGCGDDCVSIQTGCSNVHIHHINCGPGHGISLGGLGKDKSV ACVSDIIVEKISMKNTMAGVRIKTWQGGIGSVKNVTFSNINVDDVKVPIVIDQYYCDKHFCKNQTGAVGISGVRYDKIIGSYSVQPVHIACSNDVPCTDV DLIDIQLKPSCDYGRSVKQALCWN |
Full Sequence |
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Protein Sequence Length: 458 Download |
MTTNKNSALL PLFLFMVIMF VTFSIISVEA RKHHTNKSRA HKHKKDRGGN NNAHVLPPAP 60 APLPHPTHSL IFNILSFEAK GDGVSDDSLA LLAAWRAACK VTGASVVIPS KFKFLIKPIT 120 LQGPCMPHLV LQIDGTVLAS SKVSSWPKSS LFQWINFKWI HNFTIQGAGI VDGQGSDWWT 180 LSHAYDLQAL RFYDSHNVTV REITIINSPQ CHLKFDSSNA IRVNNITISS PESSPNTDGI 240 HLQNTRDVEI QNSNIGCGDD CVSIQTGCSN VHIHHINCGP GHGISLGGLG KDKSVACVSD 300 IIVEKISMKN TMAGVRIKTW QGGIGSVKNV TFSNINVDDV KVPIVIDQYY CDKHFCKNQT 360 GAVGISGVRY DKIIGSYSVQ PVHIACSNDV PCTDVDLIDI QLKPSCDYGR SVKQALCWNS 420 YGRSEAPLFP SSIDYCLRRD RGGSVNRIAK SHENVCH* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 5.0e-66 | 99 | 402 | 311 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03010 | PLN03010 | 2.0e-69 | 71 | 402 | 337 | + polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-69 | 72 | 424 | 359 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 3.0e-70 | 77 | 430 | 366 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-86 | 71 | 431 | 374 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_189293.1 | 0 | 29 | 456 | 29 | 468 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002266099.1 | 0 | 29 | 457 | 29 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312682.1 | 0 | 31 | 456 | 31 | 466 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002315680.1 | 0 | 72 | 442 | 1 | 376 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527898.1 | 0 | 1 | 456 | 1 | 477 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-24 | 162 | 354 | 110 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 2e-20 | 73 | 438 | 22 | 361 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 2iq7_G | 3e-20 | 97 | 388 | 1 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 3e-20 | 97 | 388 | 1 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 3e-20 | 97 | 388 | 1 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |